 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PH01000783G0460 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
| Family |
bHLH |
| Protein Properties |
Length: 474aa MW: 50618.3 Da PI: 6.9626 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PH01000783G0460 | genome | ICBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 41.5 | 2.4e-13 | 328 | 374 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+h e+Er+RR+++N++f Lr ++Pk + K++Ka+ L A+ YI++L+
PH01000783G0460 328 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 374
799***********************66......****************996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 474 aa
Download sequence Send
to blast |
MSLSETDAAL FAAVLGQDAA HHLATTPPYL DGPPASSSAE LQARLHDLVE RGGAWTYGIF 60
WQESRTGAGD RAVLGWGDGH CRDGTPHDPA GEAGAADRSM ARKRVLLRLH SLYGGGDEEG 120
ADYALRLDRV TGAEMYFLAS MYFSFPEGAG GPGRALASGR LAWAVVDPHP PGAAPAPAPG 180
WHVRASLAQS AGLRTIVFLP CKGGVLELGS VVAIRETPEV LRAIQSAFRV EPAPPEDYMR 240
IFGKDLSRCA QMPPAQTTGC DATWAPGLGG QAMPERPAKR EVVKAKPAEP PKSIDFTKPD 300
AQEQAAGEER RPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV VPKISKMDKA 360
SLLSDAIAYI QELEARLRGG EAGPARAEGP AVEVKAMQDE VLLRVTTPLD THPISGVLHA 420
IRDSQLSVVA SDVAVADEAV THTLMVRSAG AERLTAETVL AAMSRGMNST TPSP
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5gnj_A | 4e-26 | 322 | 410 | 2 | 83 | Transcription factor MYC2 |
| 5gnj_B | 4e-26 | 322 | 410 | 2 | 83 | Transcription factor MYC2 |
| 5gnj_E | 4e-26 | 322 | 410 | 2 | 83 | Transcription factor MYC2 |
| 5gnj_F | 4e-26 | 322 | 410 | 2 | 83 | Transcription factor MYC2 |
| 5gnj_G | 4e-26 | 322 | 410 | 2 | 83 | Transcription factor MYC2 |
| 5gnj_I | 4e-26 | 322 | 410 | 2 | 83 | Transcription factor MYC2 |
| 5gnj_M | 4e-26 | 322 | 410 | 2 | 83 | Transcription factor MYC2 |
| 5gnj_N | 4e-26 | 322 | 410 | 2 | 83 | Transcription factor MYC2 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 309 | 317 | RRPRKRGRK |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FP095230 | 0.0 | FP095230.1 Phyllostachys edulis cDNA clone: bphylf052e07, full insert sequence. |
