PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000783G0460
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 474aa    MW: 50618.3 Da    PI: 6.9626
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000783G0460genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13328374455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI++L+
  PH01000783G0460 328 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 374
                      799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.5E-4141228IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-16327382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.76E-15327378No hitNo description
Gene3DG3DSA:4.10.280.105.1E-16327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-11328374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-15330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MSLSETDAAL FAAVLGQDAA HHLATTPPYL DGPPASSSAE LQARLHDLVE RGGAWTYGIF  60
WQESRTGAGD RAVLGWGDGH CRDGTPHDPA GEAGAADRSM ARKRVLLRLH SLYGGGDEEG  120
ADYALRLDRV TGAEMYFLAS MYFSFPEGAG GPGRALASGR LAWAVVDPHP PGAAPAPAPG  180
WHVRASLAQS AGLRTIVFLP CKGGVLELGS VVAIRETPEV LRAIQSAFRV EPAPPEDYMR  240
IFGKDLSRCA QMPPAQTTGC DATWAPGLGG QAMPERPAKR EVVKAKPAEP PKSIDFTKPD  300
AQEQAAGEER RPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV VPKISKMDKA  360
SLLSDAIAYI QELEARLRGG EAGPARAEGP AVEVKAMQDE VLLRVTTPLD THPISGVLHA  420
IRDSQLSVVA SDVAVADEAV THTLMVRSAG AERLTAETVL AAMSRGMNST TPSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-26322410283Transcription factor MYC2
5gnj_B4e-26322410283Transcription factor MYC2
5gnj_E4e-26322410283Transcription factor MYC2
5gnj_F4e-26322410283Transcription factor MYC2
5gnj_G4e-26322410283Transcription factor MYC2
5gnj_I4e-26322410283Transcription factor MYC2
5gnj_M4e-26322410283Transcription factor MYC2
5gnj_N4e-26322410283Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309317RRPRKRGRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000783G0460
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0952300.0FP095230.1 Phyllostachys edulis cDNA clone: bphylf052e07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628703.10.0transcription factor bHLH13
TrEMBLA2ZX100.0A2ZX10_ORYSJ; Uncharacterized protein
STRINGONIVA01G32020.10.0(Oryza nivara)
STRINGORGLA01G0232100.10.0(Oryza glaberrima)
STRINGOBART01G28080.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.12e-65bHLH family protein