PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000574G0360
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 443aa    MW: 49309.4 Da    PI: 9.3573
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000574G0360genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.48e-06143161725
                      SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   7 rffartGtCkyGdrCkFaH 25 
                      ++++  G Ck+G +Ck+ H
  PH01000574G0360 143 QYYSTPGGCKFGKSCKYLH 161
                      59***************** PP
2zf-CCCH32.91.1e-10202226226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C++++rtG Ck+  +CkF+H+
  PH01000574G0360 202 GEKECPYYMRTGSCKFATNCKFHHP 226
                      6789********************9 PP
3zf-CCCH20.31e-06347373127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C++f ++G Ck+  +Ck++H++
  PH01000574G0360 347 PGQPECQHFVKSGVCKFRMKCKYHHPR 373
                      5789*********************96 PP
4zf-CCCH22.71.7e-07392417227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C ++ r+G+Ck+G+ C ++H++
  PH01000574G0360 392 DQPVCTYYGRYGICKFGPACMYNHPF 417
                      6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.009136164IPR000571Zinc finger, CCCH-type
SMARTSM003563.7141163IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-5200227IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605200228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.55E-5201228IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-7202226IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4206225IPR000571Zinc finger, CCCH-type
SMARTSM003560.08346373IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.159346374IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-5350375IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.948390418IPR000571Zinc finger, CCCH-type
SMARTSM003560.0019390417IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-5391417IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-5392417IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MTKKMMKLIK IEKSVKSSRI RIDRSMTAQI VAQDGGGAVQ KKRNAMHKKR NGGTGFADKG  60
STSNSENLKK TSYEVIDVNK GRMEPTELKI AEETEKGIYL KKLDVADQKI PKAAKEKRNE  120
TLSEGSAQEE CKLSPGVPEI IFQYYSTPGG CKFGKSCKYL HREGKEGKTE AEKVELNFLG  180
LPLRPYTCTS NFKFKFNICW KGEKECPYYM RTGSCKFATN CKFHHPDPTN SASKDPVLEH  240
GNGDTPQQNV HGSSQPNVSI WPDQRALNEQ HVPFLAPAPS YSAGMIPPQG MYPSPEWSAY  300
HQVPLNPYYP PGVPFQHFHA PINHPMYKAA DIPGHQQLPS DEYPERPGQP ECQHFVKSGV  360
CKFRMKCKYH HPRSRVPPTG ALSPLGLPIK PDQPVCTYYG RYGICKFGPA CMYNHPFNFG  420
PPVVAAGPPL SGQYPIPGDY SV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000574G0360
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620300.10.0zinc finger CCCH domain-containing protein 65 isoform X1
RefseqXP_015620301.10.0zinc finger CCCH domain-containing protein 65 isoform X2
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A0E0FBA00.0A0A0E0FBA0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FBA20.0A0A0E0FBA2_9ORYZ; Uncharacterized protein
STRINGOMERI12G06060.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-58C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]