PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000317G0080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 209aa MW: 24088.5 Da PI: 9.0633 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.3 | 2e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRrngilKKA E+SvLCdaev +ifss gkly+y+s PH01000317G0080 9 KRIENSTNRQVTFSKRRNGILKKAREISVLCDAEVGAVIFSSGGKLYDYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 72.9 | 9.4e-25 | 71 | 167 | 1 | 97 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 yq++sgk l+++k++sl+ e++++kke++n+q e+Rhl+GedL+sL+ keL +e++Le++l++ +k ++++ + +++ ++ e+e++ +L PH01000317G0080 71 YQTNSGKILWDEKHKSLSSEIDRIKKENDNMQIELRHLKGEDLNSLQPKELITIEKALENGLTNLNEKLMDHWERLVRNGKMLEDENKLLAFKL 164 89999999********************************************************************************999999 PP K-box 95 rkk 97 +++ PH01000317G0080 165 HQQ 167 997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.8E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.702 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.44E-44 | 2 | 80 | No hit | No description |
SuperFamily | SSF55455 | 2.49E-34 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.9E-16 | 82 | 164 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.637 | 84 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MGRGKIEIKR IENSTNRQVT FSKRRNGILK KAREISVLCD AEVGAVIFSS GGKLYDYCSP 60 KTSLSRILEK YQTNSGKILW DEKHKSLSSE IDRIKKENDN MQIELRHLKG EDLNSLQPKE 120 LITIEKALEN GLTNLNEKLM DHWERLVRNG KMLEDENKLL AFKLHQQDVA LSGSMRDLEL 180 GYHPDRDFAA QMPITFRVQP SHPNLQENN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 3e-19 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-19 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-19 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-19 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
5f28_A | 4e-19 | 1 | 86 | 1 | 78 | MEF2C |
5f28_B | 4e-19 | 1 | 86 | 1 | 78 | MEF2C |
5f28_C | 4e-19 | 1 | 86 | 1 | 78 | MEF2C |
5f28_D | 4e-19 | 1 | 86 | 1 | 78 | MEF2C |
6bz1_A | 4e-19 | 1 | 91 | 1 | 83 | MEF2 CHIMERA |
6bz1_B | 4e-19 | 1 | 91 | 1 | 83 | MEF2 CHIMERA |
6bz1_C | 4e-19 | 1 | 91 | 1 | 83 | MEF2 CHIMERA |
6bz1_D | 4e-19 | 1 | 91 | 1 | 83 | MEF2 CHIMERA |
6c9l_A | 3e-19 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-19 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-19 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-19 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-19 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-19 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000317G0080 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP099210 | 0.0 | FP099210.1 Phyllostachys edulis cDNA clone: bphyem127e18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006645133.1 | 1e-145 | PREDICTED: MADS-box transcription factor 2 | ||||
Swissprot | Q40702 | 1e-145 | MADS2_ORYSJ; MADS-box transcription factor 2 | ||||
TrEMBL | A0A3Q8BIA9 | 1e-150 | A0A3Q8BIA9_BAMOL; MADS2 | ||||
STRING | OB01G48280.1 | 1e-144 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3434 | 38 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 2e-75 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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