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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000183G0940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 1288aa MW: 139540 Da PI: 6.41 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.8 | 7.9e-08 | 23 | 68 | 4 | 45 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVk 45 ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+k PH01000183G0940 23 YVRYTPEQVEALERVYTECPKPSSLRRQHLIRECpilsNIEPKQIK 68 6789****************************************98 PP | |||||||
2 | START | 172.2 | 3.4e-54 | 192 | 399 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ +++l vi +g g+++l PH01000183G0940 192 IAEETLAEFLSKATGTAVEWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDILHVIPTGngGTIEL 284 68999*****************************************************.8888888888************************* PP EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183 ++++++a+++l++ Rdf+++Ry+ l++g++vi+++S+++ + p+ +++++Rae+lpSg+li+p+++g+s +++v+hvdl++++++++lr+ PH01000183G0940 285 IYMQTYAPTTLAApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFIRAEVLPSGYLIRPCEGGGSMIHMVDHVDLDAWSVPEVLRP 378 ***********999****************************9999999********************************************* PP HHHHHHHHHHHHHHHHTXXXX CS START 184 lvksglaegaktwvatlqrqc 204 l++s + ++k++ a+l++ + PH01000183G0940 379 LYESPKILAQKMTIAALRHIR 399 ****************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.14E-5 | 21 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.36E-6 | 22 | 68 | No hit | No description |
Pfam | PF00046 | 1.8E-5 | 23 | 68 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-7 | 24 | 68 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 9.29E-5 | 97 | 134 | No hit | No description |
PROSITE profile | PS50848 | 26.76 | 182 | 382 | IPR002913 | START domain |
CDD | cd08875 | 3.34E-67 | 186 | 402 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.2E-24 | 190 | 382 | IPR023393 | START-like domain |
SMART | SM00234 | 8.2E-47 | 191 | 401 | IPR002913 | START domain |
Pfam | PF01852 | 5.6E-52 | 192 | 399 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.26E-38 | 192 | 402 | No hit | No description |
Pfam | PF08670 | 1.8E-33 | 798 | 912 | IPR013978 | MEKHLA |
Pfam | PF04195 | 9.9E-8 | 1025 | 1081 | IPR007321 | Transposase (putative), gypsy type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1288 aa Download sequence Send to blast |
MAAVGSKEKL SPGAAPQVDT GKYVRYTPEQ VEALERVYTE CPKPSSLRRQ HLIRECPILS 60 NIEPKQIKFG TFAVEGVLMG WIGGKKARYS DLLLKGCREK QRKEASRLQT VNRKLTAMNK 120 LLMEENDRLQ KQVSRLVYEN GYMRNQLHNP SVATTDTSCE SVVTSGQHHQ QQNPAAPHPQ 180 RDANNPAGLL AIAEETLAEF LSKATGTAVE WVQMVGMKPG PDSIGIIAVS HNCSGVAARA 240 CGLVSLEPTK VAEILKDRPS WYRDCRCVDI LHVIPTGNGG TIELIYMQTY APTTLAAPRD 300 FWTLRYTSGL EDGSLVICER SLTQSTGGPS GPNTPNFIRA EVLPSGYLIR PCEGGGSMIH 360 MVDHVDLDAW SVPEVLRPLY ESPKILAQKM TIAALRHIRQ IAHESSGEIP YGAGRQPAAW 420 SVPEVLRPLY ESPKILAQKM TIAALRHIRQ IAHESSGEIP YGAGRQPAVL RTFSQRLSRG 480 FNDAVSGFPD DGWSLLSSDG AEDITISVNS SPNKLIGSHV SPSPLFSAIG VGILCAKASM 540 LLQNVPPALL VRFLREHRSE WADPGVDAYS AASLRASPYA VPGLRASGFM GSQVILPLAH 600 TLEHEEFLEV IRLEGHGFSH DEVLLSRDMY LLQLCSGVDE NAAGACAQLV FAPIDESFAD 660 DAPLLPSGFR VIPLDAKTDV PSATRTLDLA SALEVGSGGA SRALSDASGT CNMRSVLTIA 720 FQFSFENHLR ESVAAMARQY VRAVMASVQR VAMAIAPSRL GSQIEMKHPP GSPEALTLAS 780 WIGRSYSTVS EVVDTGETFR VHTGGEIHWS DTEDVDSPLK LLWKHSDAIL CCSLKAAPMF 840 TFANKAGLDI LETTLINLQD ISLETILDDE GRKALCSEFP KIMQQGFAYL PGGVCKSSMG 900 RQASYEQAVA WKPGLLRTPF ECSLSFLRLS LRKTLQSLRV TLRVPLVPLG RLFEGLGSPS 960 GYLLYPSGES SEPSGEDSLR CGRDAAGETE YTSDLGRSTV SRLFLETLVS EGKLEDIMKV 1020 RAPGSETVPH PRDDEAIVFV AFLDAGLRIP CVDLVSEVLR LYRVELAQLT PNSIVKLGVF 1080 EWMLRSAGIA AEEVVPVAEA VRVADVLLGL YTGEEHSRHH LVVRDRRLNR AYDVSVDLPE 1140 RVDPDAGKKK RSRMPEIEVG GPIAVKPLRV VRPSDGGGPS RHLEAAEERP SRGPVPDKAI 1200 GTIRYPRLDA TESSSGGLRS RGDGRNLEVP GDAPATSEVN VVSSGDGGND EIAEASEGRA 1260 PMGSEPDPAV LRAILGKSQI TKHQSLT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000183G0940 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102183 | 0.0 | AK102183.1 Oryza sativa Japonica Group cDNA clone:J033086M14, full insert sequence. | |||
GenBank | EU368712 | 0.0 | EU368712.1 Oryza sativa Indica Group SKIP interacting protein 22 (SIP22) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003577453.1 | 0.0 | homeobox-leucine zipper protein HOX33 | ||||
Swissprot | A2ZMN9 | 0.0 | HOX33_ORYSI; Homeobox-leucine zipper protein HOX33 | ||||
Swissprot | Q2QM96 | 0.0 | HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33 | ||||
TrEMBL | A0A0Q3EHP9 | 0.0 | A0A0Q3EHP9_BRADI; Uncharacterized protein | ||||
STRING | OMERI12G14090.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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