PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000149G0850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 267aa MW: 28785.2 Da PI: 5.0599 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.4 | 2.3e-20 | 130 | 178 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r +r +lg+f+taeeAa+a++ a+++++g PH01000149G0850 130 YRGVRQRP-WGKWAAEIRDPR----RaARKWLGTFDTAEEAARAYDCAALEFRG 178 9*******.**********82....48*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.2E-32 | 129 | 187 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-35 | 129 | 192 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.515 | 129 | 186 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-23 | 129 | 187 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.3E-11 | 130 | 141 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.54E-32 | 130 | 187 | No hit | No description |
Pfam | PF00847 | 1.7E-14 | 130 | 178 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 152 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MATTKQYFKT RFDDHGRQAS SSADANTVME FAGQLISAKQ EHSIIVAALR YVVSGCSTAP 60 PEIVSVACGE ACSLCGIDGC AFDGCLGCDF FGAEAGAPEM VQEVNCGTEQ MAAAAPAGAQ 120 RRRRRKKNMY RGVRQRPWGK WAAEIRDPRR AARKWLGTFD TAEEAARAYD CAALEFRGPR 180 AKLNFPHYEP LPGQKNGNGG DAVPVAKTEN LTPSPCSVDA EERTPGEWEL GVDESGDHLW 240 EGLQDLMKLD EGDLWFAPFS GAASSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-21 | 130 | 187 | 15 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 126 | RRRRRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000149G0850 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006660699.1 | 4e-97 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
Refseq | XP_015611044.2 | 5e-97 | ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A1E5WBD2 | 1e-102 | A0A1E5WBD2_9POAL; Uncharacterized protein | ||||
STRING | OPUNC09G11150.1 | 1e-101 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 1e-26 | redox responsive transcription factor 1 |