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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PH01000059G1270 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 222aa MW: 25036.7 Da PI: 10.1696 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PH01000059G1270 | genome | ICBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 94 | 6.9e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien + rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++gklye++s
PH01000059G1270 9 KRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSPRGKLYEFAS 59
79***********************************************86 PP
|
| 2 | K-box | 63.1 | 1e-21 | 78 | 171 | 5 | 98 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
++++++++ + + ++ L k++e L+ ++R++lGe+Le +s +eLq+Le +L ksl +iR kK++ll +qi +l++ke+ l ++n++Lr+k
PH01000059G1270 78 ANNRTAQQDILQVKADAVSLAKKLEALEDSKRKILGENLEGCSAEELQSLEVKLGKSLHNIRVKKTQLLEQQIAKLKEKERTLLKDNEDLREKH 171
444577788888999999*************************************************************************996 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 2.9E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 31.469 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 2.64E-40 | 3 | 76 | No hit | No description |
| PRINTS | PR00404 | 8.9E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 3.01E-31 | 3 | 81 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.0E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 8.9E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 8.9E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 5.0E-23 | 83 | 170 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 12.989 | 87 | 177 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010048 | Biological Process | vernalization response |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 222 aa
Download sequence Send
to blast |
MVRGKTQMKR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIVFSP RGKLYEFASA 60
TSLQKTIDRY KAHTKDNANN RTAQQDILQV KADAVSLAKK LEALEDSKRK ILGENLEGCS 120
AEELQSLEVK LGKSLHNIRV KKTQLLEQQI AKLKEKERTL LKDNEDLREK HRNLQAPLVV 180
PALSRMAPPR DVPEPSSNDM DVETELYIGL PGRDRTSNRE SG
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3mu6_A | 6e-19 | 3 | 73 | 2 | 71 | Myocyte-specific enhancer factor 2A |
| 3mu6_B | 6e-19 | 3 | 73 | 2 | 71 | Myocyte-specific enhancer factor 2A |
| 3mu6_C | 6e-19 | 3 | 73 | 2 | 71 | Myocyte-specific enhancer factor 2A |
| 3mu6_D | 6e-19 | 3 | 73 | 2 | 71 | Myocyte-specific enhancer factor 2A |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FP091516 | 0.0 | FP091516.1 Phyllostachys edulis cDNA clone: bphylf032d21, full insert sequence. |
