PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

C2H2

Protein Properties

Length: 305aa MW: 32224.3 Da PI: 7.3113

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000021G0290	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.0005	116	138	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H PH01000021G0290 116 YECKTCNKCFPTFQALGGHRASH 138 99**********99999998887 PP
2	zf-C2H2	11.9	0.00068	204	226	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H PH01000021G0290 204 HECSICGAEFASGQALGGHMRRH 226 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.7E-11	115	140	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.24E-9	115	138	No hit	No description
SMART	SM00355	0.094	116	138	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.097	116	143	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	118	138	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.24E-9	199	226	No hit	No description
Pfam	PF13912	1.3E-12	203	227	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.699	204	231	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.016	204	226	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	206	226	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MELSGEEDKQ QQHLAVVVKR ERTKRPRHHP PAKSASSSES TTTEEEDMAH CLILLAQGAA 60 VDSKPSPAPA PVQPQAQPSP PAAAPPPVVK SERYTSRKYT EAATTVDGVR AGFYVYECKT 120 CNKCFPTFQA LGGHRASHKK PRLAGSDEEN ANASTVTIAK SKPPMTTASQ PPSQVDASIV 180 PAPDVTTVLS LNNGAGSINK LRVHECSICG AEFASGQALG GHMRRHRPLH PPERAVTAIT 240 TDTKKEGSTS INLELDLNLP APSDEESVSL PPPPPPVVLG LGQFDDGKKG LMLTASAALV 300 DCHY*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00487	DAP	Transfer from AT5G04390	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000021G0290

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003989	7e-78	AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06.
GenBank	AP004026	7e-78	AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04.
GenBank	AP014958	7e-78	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	7e-78	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822199.1	1e-122	zinc finger protein ZAT5-like
TrEMBL	A0A2S3GUR4	1e-121	A0A2S3GUR4_9POAL; Uncharacterized protein
STRING	Traes_6DL_88DFCF552.1	1e-114	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2013	32	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	6e-44	C2H2 family protein