PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400067480
Common NameLOC107061236
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 234aa    MW: 26568.4 Da    PI: 6.5856
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400067480genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY45.61.4e-141642091659
                           TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY  16 kgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 
                           k s++ ++YY C+    +Cp+k++ve+s++dp+ v++tY+geHnh+
  PGSC0003DMP400067480 164 KTSTTGKNYYLCSEFkkKCPAKRHVEQSSTDPTKVIVTYKGEHNHP 209
                           6788999******8767****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007744.6E-8154210IPR003657WRKY domain
SuperFamilySSF1182906.67E-12162211IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-13164211IPR003657WRKY domain
PROSITE profilePS5081116.306164211IPR003657WRKY domain
PfamPF031063.7E-11165209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAENENDWDL GAIVRSCSKM SNSSLVDHTV HEDGYSALVD HTVHEDGNSV NTSLFQEERN  60
CVGDFKDAFA MENKRYFGLD EVISLSRNLN TNSRIAPHNQ ENQTETIPNT PLVIIEHEEE  120
KKKKKKARYS MQSSSTESGK RIERHEILYE EFGKAEQWRW IMNKTSTTGK NYYLCSEFKK  180
KCPAKRHVEQ SSTDPTKVIV TYKGEHNHPP PNQHRSPNAA APPEDPSSSS FVP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400067480
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-119HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165591.11e-176PREDICTED: WRKY transcription factor 22-like
TrEMBLM1DX321e-175M1DX32_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000958051e-176(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA110911323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.17e-13WRKY family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]