PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400058490
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 316aa    MW: 36939.4 Da    PI: 5.8109
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400058490genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.92.1e-14588190
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                          ffkv+  +  ++ +r+ +p  ++ +++ +++ ++++ l+d+ g+ W +++  +k+++ ++++ GW++F ++n+++  Df+++ +d++  f
  PGSC0003DMP400058490  5 FFKVF--NPKTSAKRMKIPTGYT-NYK-NEKLPRKVFLRDRYGNMWPIRV--TKQGRDIYFKYGWEKFIEDNNMEFADFLIIDYDWKGIF 88
                          88999..666666789******9.775.456999****************..********************************997655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-16397IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.111396IPR003340B3 DNA binding domain
CDDcd100171.20E-9586No hitNo description
SuperFamilySSF1019367.65E-17598IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.8E-7596IPR003340B3 DNA binding domain
PfamPF023621.1E-12588IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-7205303IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-8206292IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.4225307IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEKGFFKVFN PKTSAKRMKI PTGYTNYKNE KLPRKVFLRD RYGNMWPIRV TKQGRDIYFK  60
YGWEKFIEDN NMEFADFLII DYDWKGIFDF KLLGINGCVK NGAGGKKKGE EMNVEHEKSV  120
ESKEKTWVSD SSNSSSDYDS DEHYMVEEDV VKEDVEMKQE THKRASCSKR RYVEEEEDEK  180
REGEGEEKEA QEEEDEEENE GAGTYTKKVQ HSKVGCQKSN ACKYIPMDVL RDYKLELPPS  240
MTIRDSACRE FETRVSKWTD GRIWLLGGWR NLGRFNLVEK DDRYICEFVR GKCGKGLYLQ  300
VQVLHEGSSS HLDNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-112988104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400058490
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-171HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027770100.11e-134B3 domain-containing protein At5g60140-like
TrEMBLM1DCJ60.0M1DCJ6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000868150.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.16e-15B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]