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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400058294 | ||||||||
Common Name | LOC107062306 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 187aa MW: 20959.8 Da PI: 7.3862 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.8 | 1.9e-20 | 3 | 45 | 2 | 44 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 r +n++n qvtfskRr g++KKA ELS+LC+a+v v++fs + PGSC0003DMP400058294 3 RMQNERNLQVTFSKRRDGVFKKATELSTLCGADVVVVVFSLSK 45 779************************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-20 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.694 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.36E-21 | 2 | 65 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.2E-22 | 3 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-8 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-8 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MARMQNERNL QVTFSKRRDG VFKKATELST LCGADVVVVV FSLSKKPYSC GHPSVESIMN 60 RFLVENPPTD IDAPNPIVIA HQNANTDEIN TKLNRLEIPF EREKKYGEAL QSSRKELPIE 120 KLSSFDFKNL CKALEVADEA IERVLSIKKE CGFEFPYQTI GSAFTPLRVT KHSSSDSYER 180 PSGSNE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400058294 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243026 | 0.0 | AC243026.1 Solanum tuberosum chromosome 11 clone RH059C07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015168304.1 | 1e-136 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | M1DC55 | 1e-135 | M1DC55_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400086619 | 1e-136 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 5e-28 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400058294 |
Entrez Gene | 107062306 |
Publications ? help Back to Top | |||
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