PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400056687 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 140aa MW: 16082.3 Da PI: 10.3929 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.7 | 7e-19 | 78 | 127 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++k +grWvAeIrd+ r kr +lg+f+ta eAa a+++a +l+g PGSC0003DMP400056687 78 NYRGVRQRK-WGRWVAEIRDV-----RmnKRRWLGSFDTALEAALAYDKATIELKG 127 59******9.**********6.....334*********************999987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 1.1E-33 | 6 | 139 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 2.85E-26 | 77 | 131 | No hit | No description |
SuperFamily | SSF54171 | 1.83E-17 | 78 | 131 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.02 | 78 | 136 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-12 | 78 | 127 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-25 | 78 | 138 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-24 | 78 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-9 | 79 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-9 | 101 | 117 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 140 aa Download sequence Send to blast |
MGERFVVLPH VVRIYITDND ATNSSSDEEE NLQGEMSKRH KRICKEIIIR NGKTNVTSKM 60 VSSKEKTDTK LLQENVKNYR GVRQRKWGRW VAEIRDVRMN KRRWLGSFDT ALEAALAYDK 120 ATIELKGANA VKESNPIHH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-15 | 77 | 131 | 1 | 56 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-15 | 77 | 131 | 4 | 59 | ATERF1 |
3gcc_A | 3e-15 | 77 | 131 | 4 | 59 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400056687 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC245829 | 1e-107 | AC245829.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-4l7 map 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025885736.1 | 2e-71 | ethylene-responsive transcription factor ERF069-like | ||||
TrEMBL | M1D8K0 | 2e-98 | M1D8K0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400085012 | 3e-99 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G27950.1 | 6e-28 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400056687 |
Publications ? help Back to Top | |||
---|---|---|---|
|