PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400054107
Common NameLOC102581594
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 369aa    MW: 41618.5 Da    PI: 6.5584
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400054107genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00062185207123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+C+ C+++Fs+   L  H  +H
  PGSC0003DMP400054107 185 YECKTCNRTFSSFQALGGHRASH 207
                           99**********99999998887 PP
2zf-C2H213.80.00017270292123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++Cg  F++   L  H+r+H
  PGSC0003DMP400054107 270 HECSYCGAEFTSGQALGGHMRRH 292
                           78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.4E-12184209IPR007087Zinc finger, C2H2
SuperFamilySSF576675.54E-8184207No hitNo description
SMARTSM003550.063185207IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.074185212IPR007087Zinc finger, C2H2
PROSITE patternPS000280187207IPR007087Zinc finger, C2H2
SuperFamilySSF576675.54E-8265292No hitNo description
Gene3DG3DSA:3.30.160.604.7E-4268294IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.3E-12270294IPR007087Zinc finger, C2H2
SMARTSM003550.0098270292IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.533270297IPR007087Zinc finger, C2H2
PROSITE patternPS000280272292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEALEEVVVC PSKDLFHIVK GKRTKRLRLQ SPNIPFSLTT SHDSLNACDI AIENSSNNNN  60
NNIINNIDND NRDDVACNDE GIACNDNNIS NNNNNNNNNE ALSSAASSEV FINTFTEEEE  120
ETAKCLVLLS KGRNDHPPPR RLINNNNVDF FNEDLRLYPT KFNSKRYIET STNSIDGTKA  180
GIYVYECKTC NRTFSSFQAL GGHRASHKKP KTLNTEFNKK SYFDFSDEDD YHLQHSPSTL  240
YNKNKNTNNI NKNLPNSSNN KYSSSSPRIH ECSYCGAEFT SGQALGGHMR RHRGGANVNS  300
PYHLSNLSPA TSIDQEFGNN NNIMKKQRDH ELSLDLNNLP VHQDDHPVVS LKQQDQEQTQ  360
RQLVDCHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400054107
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361708.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLM1D2E80.0M1D2E8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000797730.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.16e-43C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]