PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400052698
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 319aa    MW: 36083.1 Da    PI: 6.1377
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400052698genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05153172120
                           EEETTTTEEESSHHHHHHHH CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                           ++Cp C k+F+r  n++ H+
  PGSC0003DMP400052698 153 FSCPVCFKTFNRYNNMQMHM 172
                           89*****************9 PP
2zf-C2H214.78.9e-05237259123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           + C +Cgk F  + + ++H +++
  PGSC0003DMP400052698 237 FMCRKCGKAFAVRGDWRTHEKNC 259
                           89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.81E-5149175No hitNo description
Gene3DG3DSA:3.30.160.604.4E-6153172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64153180IPR007087Zinc finger, C2H2
SMARTSM003550.38153175IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
SuperFamilySSF576671.36E-6219257No hitNo description
Gene3DG3DSA:3.30.160.608.3E-6233257IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808237257IPR007087Zinc finger, C2H2
SMARTSM0035549237257IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MTDPNFYSQE EEWLKLNNPN IPSPPPNNNY YETPPSPPLK EALPLLSLLK HDDDDDDDDE  60
GCCSISDLDK KGRDIDDNSC TKDDEDEDVT VALHIGLPNP SSADLASILS SNNNNDDFSI  120
PMNMINTTST STSTSRQYWI PTPSQILIGP TQFSCPVCFK TFNRYNNMQM HMWGHGSQYR  180
KGPESLRGTQ PTGMLRLPCY CCTPGCRNNI DHPRAKPLKD FRTLQTHYKR KHGIKPFMCR  240
KCGKAFAVRG DWRTHEKNCG KLWYCICGSD FKHKRSLKDH IKAFGQGHGP YGIHSFDDDD  300
EDPASEVEQD NPQHTHSL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400052698
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361385.20.0PREDICTED: zinc finger protein WIP2
RefseqXP_015170746.10.0PREDICTED: zinc finger protein WIP2
SwissprotQ9SVY11e-126ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLM1CYY60.0M1CYY6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000778220.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-126C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  3. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]