PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400052696
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 282aa    MW: 31822.3 Da    PI: 4.7072
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400052696genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-05153172120
                           EEETTTTEEESSHHHHHHHH CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                           ++Cp C k+F+r  n++ H+
  PGSC0003DMP400052696 153 FSCPVCFKTFNRYNNMQMHM 172
                           89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.44E-5149175No hitNo description
Gene3DG3DSA:3.30.160.603.8E-6153172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64153180IPR007087Zinc finger, C2H2
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MTDPNFYSQE EEWLKLNNPN IPSPPPNNNY YETPPSPPLK EALPLLSLLK HDDDDDDDDE  60
GCCSISDLDK KGRDIDDNSC TKDDEDEDVT VALHIGLPNP SSADLASILS SNNNNDDFSI  120
PMNMINTTST STSTSRQYWI PTPSQILIGP TQFSCPVCFK TFNRYNNMQM HMWGHGSQYR  180
KGPESLRGTQ PTGHYTSFEQ PIGVKKSKLK RSKDEGLSSA KLFKIENNRL GKMLSESATS  240
KQQDGERLDR YIKAKEFRDE TKILMKNLET ISDPNVRDYL Q*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400052696
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755151e-122HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361385.21e-140PREDICTED: zinc finger protein WIP2
RefseqXP_015170746.11e-140PREDICTED: zinc finger protein WIP2
SwissprotQ8W0313e-41ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLM1CYY40.0M1CYY4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000778221e-139(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-39C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]