PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

TCP

Protein Properties

Length: 367aa MW: 38626 Da PI: 4.988

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400041960	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.9	5.4e-36	88	191	3	109
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++ ++ti WLl+ a+pai+++tgt++ +a ++ +++ + + + a PGSC0003DMP400041960 88 PVKRSSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSEGETIRWLLERAEPAIIAATGTGTVPAIAVsVNGTLKIPTT----SPA 172 5699***********************************************************8888844421111111111....111 PP TCP 91 aksaakskksqksaasaln 109 a+++ +s+ ++++ a++++ PGSC0003DMP400041960 173 ANNEGESSTKRRKRAANSE 191 1222222222222222232 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.0E-29	92	175	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.312	93	147	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031347	Biological Process	regulation of defense response

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MASVENNQNI EQEDDEVSDS KIDPLLGDSH EYTIAAVGNV TDAEGVDPSP APSTDMVLLL 60 KEEPEENDLR VSTSVGMNMQ LQKVEKQPVK RSSKDRHTKV EGRGRRIRMP AACAARIFQL 120 TRELGHKSEG ETIRWLLERA EPAIIAATGT GTVPAIAVSV NGTLKIPTTS PAANNEGESS 180 TKRRKRAANS EFYEVHEASS FAPVAPIAPQ GLVPVWPVGS GNGLVPTTAF TGGATFYMLP 240 PGTNTTVGAQ LWATPIFNVP GRTISNFVSA MQPGMGYAAG GVSSVAAANE VHLSSSFCVS 300 KSDGNGDKLG NVASAMAPSS SSTGSTTTST TQMLRDFSLE IYDKRELQFM VGSGSSENDQ 360 TSSSKS*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MASVENNQNI EQEDDEVSDS KIDPLLGDSH EYTIAAVGNV TDAEGVDPSP APSTDMVLLL  60
KEEPEENDLR VSTSVGMNMQ LQKVEKQPVK RSSKDRHTKV EGRGRRIRMP AACAARIFQL  120
TRELGHKSEG ETIRWLLERA EPAIIAATGT GTVPAIAVSV NGTLKIPTTS PAANNEGESS  180
TKRRKRAANS EFYEVHEASS FAPVAPIAPQ GLVPVWPVGS GNGLVPTTAF TGGATFYMLP  240
PGTNTTVGAQ LWATPIFNVP GRTISNFVSA MQPGMGYAAG GVSSVAAANE VHLSSSFCVS  300
KSDGNGDKLG NVASAMAPSS SSTGSTTTST TQMLRDFSLE IYDKRELQFM VGSGSSENDQ  360
TSSSKS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00667	PBM	Transfer from GSVIVG01027588001	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400041960

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006362699.1	0.0	PREDICTED: transcription factor TCP19
TrEMBL	M1C8W5	0.0	M1C8W5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400062327	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	4e-67	TCP family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400041960
Entrez Gene	102587457

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]