PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400033713 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 239aa MW: 26704.7 Da PI: 4.4906 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 29.5 | 1.5e-09 | 146 | 165 | 2 | 21 |
--SS-EEEEEEE--TT-SS- CS WRKY 2 dDgynWrKYGqKevkgsefp 21 +D ++WrKYGqK++kgs++p PGSC0003DMP400033713 146 SDMWSWRKYGQKPIKGSPYP 165 79*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.3E-8 | 135 | 165 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.507 | 140 | 165 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.94E-7 | 143 | 166 | IPR003657 | WRKY domain |
SMART | SM00774 | 0.0031 | 145 | 179 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-5 | 147 | 165 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MEEDWDLHAV VRSCTAASSS GSNFQPRTDN DNNNSSVFCF QDPVLKSSIL LNKNKIIDDF 60 EELHQLCKPF YTQQSEQITV ISSPRKLLLQ NLPPSPSPSQ QQQQQFTLIQ PKRPLSCTLH 120 AQSPRTKRRK NQLKKVCEVA ADGLSSDMWS WRKYGQKPIK GSPYPSRDEK EDIFEDDDDE 180 FGVSDVGLDK MEPEDDFFDG LDELEIPATG EVSPEKFPGT FQFPWLANSA ATTAAGGG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400033713 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975522 | 1e-84 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015169531.1 | 1e-106 | PREDICTED: WRKY transcription factor 22-like | ||||
TrEMBL | M1BPK7 | 1e-176 | M1BPK7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400049933 | 1e-176 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2591 | 24 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 8e-25 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400033713 |
Publications ? help Back to Top | |||
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