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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400026625 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 373aa MW: 41673.8 Da PI: 7.4522 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61 | 2e-19 | 26 | 116 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ffkv+ d ++ l +p kfa++ ++ ++++ led+sg++W+v++ ++++g+ +++GW +F +++gL++gDf+vF+++ + PGSC0003DMP400026625 26 FFKVM--IDKRFLQVLFFPPKFARSVSHL--TDQETYLEDSSGQRWRVTV--CNHKGSLSIRQGWPKFSSDHGLDVGDFLVFHYVPGQH 108 88888..788888899*********9766..4568***************..*******************************986566 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 f vk+f + PGSC0003DMP400026625 109 F--IVKIFGT 116 6..9999976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.94E-22 | 22 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.197 | 24 | 117 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.04E-17 | 25 | 114 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-20 | 25 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.4E-12 | 26 | 117 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-17 | 26 | 115 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MECENEACGG CKKDCMLIHG KEVLSFFKVM IDKRFLQVLF FPPKFARSVS HLTDQETYLE 60 DSSGQRWRVT VCNHKGSLSI RQGWPKFSSD HGLDVGDFLV FHYVPGQHFI VKIFGTSGCE 120 KKSCSDIGNG RKRARTYPEA TTPDELFQTT DINSVKKKSK TSAESESEKV TYKTNTANFR 180 TSTESESEKV TYKTNTANFK TSAESESEKV TYKPNTANFA TNIDSDIGKG QSVHSAIDVD 240 ESCCMIDRNA QYDQEDDRLC LHLSSFEMPA SKPLTEGTRS PFKGDIGKDN QVEANFRSQT 300 EPNLNVEIDN LNSKAPSSKL EAGIRATNMV SSPAKDIPLR DPKYKKSNEA SQFGKFFVHN 360 KLLGLFVFVV LF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400026625 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006351460.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0905400-like isoform X2 | ||||
TrEMBL | M1B7Z7 | 0.0 | M1B7Z7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400039249 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 3e-13 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400026625 |
Publications ? help Back to Top | |||
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