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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400022481 | ||||||||
Common Name | LOC102584482 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 546aa MW: 60228.4 Da PI: 5.6688 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 331.1 | 2.1e-101 | 184 | 544 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 v+ L+++Ae+++++ ++la+ +Larl+++ +s +g+p+qR+a+yf+eAL+a+la+ +a +++++s+++++++++++k+fs++sP PGSC0003DMP400022481 184 VDELIRFAECFETNAFQLAHVILARLNQRlRSAAGKPLQRAAFYFKEALQAQLAG------SARQTRPSSSSDVIQTIKSYKIFSNISP 266 678*************************999************************......888999999999**************** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgv 174 i+ fs +taNqa+leav+g+ vH+iDfdi+ G++W++++++La+++ +++p lRiT+++++e + e + ++e+L++fA+el++ PGSC0003DMP400022481 267 IPMFSSFTANQAVLEAVDGSMLVHVIDFDIGLGGHWASFMKELADKAecrkANAPVLRITALVPEE--YAVESRLIRENLTQFARELNI 353 ********************************************877666689***********66..99999**************** PP GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerfleal 261 fe+++++ +++e l+++++++ +gE++aV l+ +++r + + +++ ++++sP+vvv+v++e + +++ sF + +++ l PGSC0003DMP400022481 354 GFEIDFVLIRTFELLSFKAIKFMEGEKTAVLLSPAIFRRV------G---SGFVNDLRRISPNVVVHVDSEglMGYGAMSFRQTVIDGL 433 **************************************98......3...48*******************87788************* PP GRAS 262 eyysalfdsl.eaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347 e+ys+l++sl +a+++ + ++++k+E+++l ++iv+++ + g++ ++W+++++ aGF+pv ls++a qa++ll +v+++ PGSC0003DMP400022481 434 EFYSTLLESLeAANIGGGNcgDWMRKIENFVLFPKIVDMIGAVGRR-----GGGGSWKDAMMGAGFRPVGLSQFADFQADCLLGRVQVR 517 **********88999999999**********************998.....999*********************************** PP GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374 g++v +++++++l+W+dr+Lv++SaWr PGSC0003DMP400022481 518 GFHVAKRQAEMLLCWHDRALVATSAWR 544 **************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 44.136 | 157 | 524 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.3E-99 | 184 | 544 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0048831 | Biological Process | regulation of shoot system development |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MKVPFSTNDN VSSKPLISSN NNNLRNNVTF PAATNGSNLC YEPKSVLELR RSPSPIVDKQ 60 IITTNPDLSA LCGGGEDPLQ LGDHVLTNFE DWDSLMRELG LHDDSASLSK TNPPLSLTQS 120 ESLTQFHNLS EFSADSTQFA NPDFSFSEST FPQQFPAVNQ GSFINALDLS GDIHQNWNVG 180 FDYVDELIRF AECFETNAFQ LAHVILARLN QRLRSAAGKP LQRAAFYFKE ALQAQLAGSA 240 RQTRPSSSSD VIQTIKSYKI FSNISPIPMF SSFTANQAVL EAVDGSMLVH VIDFDIGLGG 300 HWASFMKELA DKAECRKANA PVLRITALVP EEYAVESRLI RENLTQFARE LNIGFEIDFV 360 LIRTFELLSF KAIKFMEGEK TAVLLSPAIF RRVGSGFVND LRRISPNVVV HVDSEGLMGY 420 GAMSFRQTVI DGLEFYSTLL ESLEAANIGG GNCGDWMRKI ENFVLFPKIV DMIGAVGRRG 480 GGGSWKDAMM GAGFRPVGLS QFADFQADCL LGRVQVRGFH VAKRQAEMLL CWHDRALVAT 540 SAWRC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-27 | 191 | 543 | 27 | 378 | Protein SCARECROW |
5b3h_A | 3e-27 | 191 | 543 | 26 | 377 | Protein SCARECROW |
5b3h_D | 3e-27 | 191 | 543 | 26 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400022481 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF517794 | 0.0 | EF517794.1 Solanum bulbocastanum BAC 27I18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006363143.1 | 0.0 | PREDICTED: scarecrow-like protein 15 | ||||
Swissprot | O23210 | 1e-146 | SCL15_ARATH; Scarecrow-like protein 15 | ||||
TrEMBL | M1AYI2 | 0.0 | M1AYI2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400033037 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8305 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36710.1 | 1e-146 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400022481 |
Entrez Gene | 102584482 |
Publications ? help Back to Top | |||
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