PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Dof

Protein Properties

Length: 241aa MW: 25286.1 Da PI: 8.4977

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400017852	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.3	1.7e-38	23	82	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++P+Ggg+rkn k+s PGSC0003DMP400017852 23 PEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPIGGGSRKNAKRS 82 57899***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-29	19	80	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-33	25	80	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.161	26	80	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	28	64	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0009751	Biological Process	response to salicylic acid
GO:0042545	Biological Process	cell wall modification
GO:0045787	Biological Process	positive regulation of cell cycle
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MPSDVSDRRA TKQQQGGAPA PEPEHLPCPR CDSTNTKFCY YNNYNFSQPR HFCKSCRRYW 60 THGGTLRDIP IGGGSRKNAK RSRTITTNSI NSSCLSSTLS PRDYHHAPNP SHVSPFLVPL 120 TADHGGSLPF DVKPSVNMCG SFTSLLSSAQ GPGGLLALGG FGLGVGSGIE DMGFGLGRPI 180 WPFPGVSHNS VDNNNNGAGA SIFGSTWQLA SGGEGGFVGA GGEIFNFPDL AISTHGNGMK 240 *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00402	DAP	Transfer from AT3G50410	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400017852

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006338240.1	1e-177	PREDICTED: dof zinc finger protein DOF3.4
Swissprot	Q39088	2e-52	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	M1AMQ1	1e-175	M1AMQ1_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400026137	1e-176	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4532	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	9e-45	OBF binding protein 1

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400017852
Entrez Gene	102598982

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]