PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400010522 | ||||||||
Common Name | LOC102579492 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 254aa MW: 29094.5 Da PI: 7.867 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.8 | 3.5e-17 | 18 | 107 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 fk++ + +l++p f++ ++g+ + +led+ r+W+v + ++++g +++ + W +Fv +n+L+ gDf++F+++g+s+f PGSC0003DMP400010522 18 FKIF--HPEICYPQLRIPPAFIKFFNGD--IPSICVLEDLAARTWKVVV--KRNDGDFFFMESWPDFVLDNNLEYGDFLTFSYTGNSKF 100 5555..555555689*******998766..45579**************..**********************************9999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +vk++ k PGSC0003DMP400010522 101 --YVKIYGK 107 ..9999876 PP | |||||||
2 | B3 | 36.2 | 1.1e-11 | 160 | 251 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 + +++++l+++rl lp +f + + + k+++ tl++ ++ sW++ ++ +r l++G ++F ++n L+++D++ Fkl+++++ l PGSC0003DMP400010522 160 IVIKASHLNRARLNLPAPFGNCYLKRKQRPLRATLRT-DSGSWTIVP---QYYDRLELREGMQKFIDDNALRVNDVCRFKLIDDEKLIL 244 567889999***********88877777888899888.6679**999...3445677*************************9999988 PP EEEEE-S CS B3 93 vvkvfrk 99 +v++ r+ PGSC0003DMP400010522 245 KVRIKRQ 251 8888775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.55E-24 | 10 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.5E-21 | 12 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.74E-18 | 15 | 105 | No hit | No description |
SMART | SM01019 | 1.3E-15 | 17 | 108 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-15 | 27 | 107 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.802 | 30 | 108 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.75E-11 | 156 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-10 | 156 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.54E-7 | 157 | 250 | No hit | No description |
PROSITE profile | PS50863 | 8.727 | 157 | 252 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-7 | 158 | 252 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-9 | 160 | 251 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MVTPVEHVSI PHDLPEFFKI FHPEICYPQL RIPPAFIKFF NGDIPSICVL EDLAARTWKV 60 VVKRNDGDFF FMESWPDFVL DNNLEYGDFL TFSYTGNSKF YVKIYGKNGC LKQDVTALKE 120 PDLLPLVEEN ARGKSIVAEP ADQTDNGSGD MAASVTSFEI VIKASHLNRA RLNLPAPFGN 180 CYLKRKQRPL RATLRTDSGS WTIVPQYYDR LELREGMQKF IDDNALRVND VCRFKLIDDE 240 KLILKVRIKR QPK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 2e-13 | 16 | 110 | 10 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400010522 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-139 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006361103.1 | 0.0 | PREDICTED: putative B3 domain-containing protein Os03g0621600 | ||||
Refseq | XP_015170626.1 | 0.0 | PREDICTED: putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | M1A5L9 | 0.0 | M1A5L9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400015191 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12633 | 13 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 7e-21 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400010522 |
Entrez Gene | 102579492 |
Publications ? help Back to Top | |||
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