PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000201
Common NameLOC102597029
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 418aa    MW: 44492.2 Da    PI: 5.9853
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000201genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.36e-22274336163
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           e+elkre+rkq+NRe+ArrsR+RK+ae eeL  +v++L++eN +L++e+++l ++++klk ++
  PGSC0003DMP400000201 274 ERELKREKRKQSNRESARRSRLRKQAEAEELSIRVQALTGENLTLRSEINKLMENSEKLKLDN 336
                           89**********************************************************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077778.5E-37192IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.0E-37130255No hitNo description
Gene3DG3DSA:1.20.5.1704.8E-16268333No hitNo description
SMARTSM003382.3E-18274338IPR004827Basic-leucine zipper domain
PfamPF001707.9E-21274336IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.484276339IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.13E-10277333No hitNo description
CDDcd147026.93E-20279327No hitNo description
PROSITE patternPS000360281296IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGNSEDGKSC KLEKPSSPAP DQSNLHVYPD WAAMQAYYGP RVAVPAYFNS AVAPGHTPHP  60
YMWGPQPMVP PYGAPYAAIY AHGGVYAHPG VPIGSHPPGH VIATSPVVSQ AMDGASLSLD  120
ASAKSLGNSD RGLMTKLKEF EGLAMSLGNG STDNVEGGTD NGHSQSGETE GSTDGSDTNG  180
AGVSERSKKR SCETTPDNSG DDKSHSRRCQ PSGEVNDDGE KSIVIAAKMT GTVLSPCMTT  240
LEMRNPASAH MKSSPTNGSP LSPALPNETW LQNERELKRE KRKQSNRESA RRSRLRKQAE  300
AEELSIRVQA LTGENLTLRS EINKLMENSE KLKLDNAALM ERLKNEELGQ TEEVSLGKIA  360
DKRLQPVGTV NLLARVNNSG SSDTTNEEGE VYENNSSGAK LHQLLDTSPR SDAVAAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290296RRSRLRK
2290297RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTrans-activator of a beta-glucuronidase (GUS) reporter gene. Binds to a G-box-related element, (5'-GCAACGTGGC-3'). Also binds to the HEX-motif of wheat histone H3 promoter.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000201
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0133410.0BT013341.1 Lycopersicon esculentum clone 135142F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339668.10.0PREDICTED: transcriptional activator TAF-1-like
SwissprotQ991421e-148TAF1_TOBAC; Transcriptional activator TAF-1 (Fragment)
TrEMBLM0ZGE80.0M0ZGE8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000002660.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31132447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-104G-box binding factor 3
Publications ? help Back to Top
  1. Oeda K,Salinas J,Chua NH
    A tobacco bZip transcription activator (TAF-1) binds to a G-box-like motif conserved in plant genes.
    EMBO J., 1991. 10(7): p. 1793-802
    [PMID:2050116]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]