 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PGSC0003DMP400000156 |
| Common Name | LOC102584992 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
WRKY |
| Protein Properties |
Length: 353aa MW: 38831.7 Da PI: 6.0427 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400000156 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 98.7 | 3.8e-31 | 169 | 227 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver+++dp+++++tY+ eHnh+
PGSC0003DMP400000156 169 SDMWSWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNRSDPNMFIVTYTAEHNHP 227
79************************9988****************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010150 | Biological Process | leaf senescence |
| GO:0010200 | Biological Process | response to chitin |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 353 aa
Download sequence Send
to blast |
MEEDWDLHAV VRGCASSSTA AATTTATTNS CCSNFQPRQD GNFFSFQDPF VPRFDNPISD 60
FEELHNLYKP FFPKSQQIPL SPQNNSNNIP ISPLSVLGGL QDLSPQQTLK QQQHIHQLNS 120
TRLTQPKQSP LSVYGSTTTS ASHVQSPRPK RRKNQLKKVC QVPAEGLSSD MWSWRKYGQK 180
PIKGSPYPRG YYRCSTSKGC LARKQVERNR SDPNMFIVTY TAEHNHPMPT HRNSLAGSTR 240
QKPANSEAGT VSDSNKPTSS SPVSSPACHS PATEKQESSR DEREDIFEDD DDEFGSSNMG 300
LDNMEPADDD FFEGLDELAA QATGDCFSDN LPGSMQLPWM SNNATTTAAG GV*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
| GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
