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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_38548 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 285aa MW: 32893.6 Da PI: 8.2905 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.3e-05 | 133 | 152 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+ksF+r n++ H+ PEQU_38548 133 FSCSVCHKSFNRYNNMQMHM 152 89*****************9 PP | |||||||
2 | zf-C2H2 | 12.8 | 0.00036 | 217 | 239 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C ksF + + ++H +++ PEQU_38548 217 FMCRKCRKSFAVRGDWRTHEKNC 239 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.82E-5 | 125 | 156 | No hit | No description |
PROSITE profile | PS50157 | 10.637 | 133 | 160 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 133 | 152 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.35 | 133 | 155 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 135 | 155 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.9E-5 | 203 | 237 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.6E-5 | 213 | 237 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 68 | 217 | 237 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MGLGKYSREE EAYSLSFIHP SPFFQWLNPL PAKPDKIECL PLLSRLEEAK KSAKEEEENE 60 RESDENLPAM ALSIGLPFFN GDFEEEKIDQ ECKGEEEEKR NECLEPGGNV LVSQNSRFWI 120 PTPAQILVGA LQFSCSVCHK SFNRYNNMQM HMWGHGSEYR KGPESLKGTQ PLAMLKLPCF 180 CCVHGCKNNI THPRAKPLKD FRTLQTHFKR KHGVKPFMCR KCRKSFAVRG DWRTHEKNCG 240 KLWFCSCGSD FKHKRSLNDH IRSFGNDHFH YIPCRNIIDG QNLPG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020598549.1 | 0.0 | zinc finger protein WIP3-like | ||||
Swissprot | Q9SGD1 | 8e-96 | ZWIP3_ARATH; Zinc finger protein WIP3 | ||||
Swissprot | Q9SVY1 | 1e-95 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A2I0XIQ3 | 1e-163 | A0A2I0XIQ3_9ASPA; Protein TRANSPARENT TESTA 1 | ||||
STRING | XP_008813791.1 | 1e-113 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4472 | 36 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 5e-95 | C2H2 family protein |
Publications ? help Back to Top | |||
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