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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PEQU_31483 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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| Family | C3H | ||||||||
| Protein Properties | Length: 84aa MW: 9355.31 Da PI: 6.4807 | ||||||||
| Description | C3H family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-CCCH | 18.5 | 3.6e-06 | 1 | 18 | 10 | 27 |
GGTS--TTTTT-SS-SSS CS
zf-CCCH 10 artGtCkyGdrCkFaHgp 27
++tG+Ck+ + C+++H++
PEQU_31483 1 MKTGYCKFKSACRYHHPK 18
89**************96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50103 | 10.258 | 1 | 19 | IPR000571 | Zinc finger, CCCH-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 84 aa Download sequence Send to blast |
MKTGYCKFKS ACRYHHPKSY LSSWRPASNN SVPLQQDDSI EQLCEITLPS ENTSNDQTTF 60 LCPSSSSTPG QANVQWNGDQ VVLT |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020590299.1 | 4e-49 | zinc finger CCCH domain-containing protein 65-like isoform X6 | ||||
| Refseq | XP_020590303.1 | 3e-49 | zinc finger CCCH domain-containing protein 67-like isoform X10 | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G48440.1 | 2e-07 | C3H family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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