![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_31429 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 199aa MW: 22078.9 Da PI: 6.5495 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.6 | 1.3e-17 | 80 | 130 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr....krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +gr+ AeIrd + kr +lg+f+taeeAa +++ a+ kl+g PEQU_31429 80 RFRGVRQRP-WGRFSAEIRD------SlvleKRLWLGTFDTAEEAASMYDLAAVKLKG 130 79*******.**********......33346**********************99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 6.1E-44 | 2 | 199 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 7.38E-26 | 79 | 139 | No hit | No description |
SuperFamily | SSF54171 | 4.58E-20 | 80 | 139 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.9E-31 | 80 | 144 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-27 | 80 | 138 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.023 | 80 | 138 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-10 | 80 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 81 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 104 | 120 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 199 aa Download sequence Send to blast |
MMVIAPRSSP LRILHIFFTD ADATESSSEE ELDSAARRRH KKRQKFEISF DGPVAVLDNP 60 ASKRSTMQQP SAAPGCDRKR FRGVRQRPWG RFSAEIRDSL VLEKRLWLGT FDTAEEAASM 120 YDLAAVKLKG DKAVTNFPIK KKDKSEDGVT VGVRSAEFVG GGKTSPTSVI GYGEDELGFD 180 DCLVYGDVDA FGFRVDDMF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-22 | 67 | 138 | 1 | 72 | Ethylene-responsive transcription factor ERF096 |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 35 | 43 | ARRRHKKRQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020597667.1 | 1e-144 | pathogenesis-related genes transcriptional activator PTI6-like | ||||
TrEMBL | A0A2I0XDN1 | 4e-47 | A0A2I0XDN1_9ASPA; Ethylene-responsive transcription factor CRF4 | ||||
STRING | XP_008240070.1 | 2e-37 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G27950.1 | 5e-27 | cytokinin response factor 4 |