PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

WOX

Protein Properties

Length: 173aa MW: 19711.5 Da PI: 9.6983

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_28508	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	40.7	4.1e-13	88	144	6	57
S--HHHHHHHHHHHHH.SSS--HHHHH....HHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFek.nrypsaeere....eLAkklgLterqVkvWFqNrRakekk 57 + +++ +Le+ F + n + s+++++ eL+k+++++e++V++WFqNrRa+ k+ PEQU_28508 88 NTNTHVALILESIFDQgNGTSSKQKIKevifELTKRVKISETNVYNWFQNRRARAKR 144 678889999****8888888887772223688999****************97 PP
2	Wus_type_Homeobox	58	2.3e-19	94	146	13	65
Wus_type_Homeobox 13 ikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 iLe+++++G t +k++i+++ eL++ ki+++NV++WFQNr+aR ++kq PEQU_28508 94 ALILESIFDQGNGTSSKQKIKEVIFELTKRVKISETNVYNWFQNRRARAKRKQ 146 469************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	4.7E-4	82	149	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.55E-11	86	147	IPR009057	Homeodomain-like
Pfam	PF00046	1.1E-10	88	144	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.7E-10	95	143	IPR009057	Homeodomain-like
CDD	cd00086	1.69E-7	96	146	No hit	No description
PROSITE profile	PS50071	11.483	97	145	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MEWVKVPTSF NDGEDRRRGV LYVKVMTDEQ MEILRCQIAV YAIICEQLVK MHRAVSAQLD 60 SLAGMRFGSL YCDPVMTSTT HKLASKLNTN THVALILESI FDQGNGTSSK QKIKEVIFEL 120 TKRVKISETN VYNWFQNRRA RAKRKQSSVA TSITESEADT QSESRNDKKA KTE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	145	RRARAKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020576547.1	1e-88	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	6e-61	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2I0WGR7	3e-74	A0A2I0WGR7_9ASPA; WUSCHEL-related homeobox 8
STRING	XP_008781303.1	7e-67	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-50	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]