PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_28083
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family M-type_MADS
Protein Properties Length: 290aa    MW: 33977.2 Da    PI: 10.692
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_28083genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.22.5e-29959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+n+qvtfskRr g+lKKA+E+SvLCda+va+iifs++gkl eys+
  PEQU_28083  9 KRIENKINQQVTFSKRRSGLLKKAHEISVLCDADVALIIFSNKGKLCEYST 59
                79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.824161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-32283IPR002100Transcription factor, MADS-box
CDDcd002658.49E-38275No hitNo description
PRINTSPR004043.3E-29323IPR002100Transcription factor, MADS-box
PfamPF003198.9E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-293859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINQQVT FSKRRSGLLK KAHEISVLCD ADVALIIFSN KGKLCEYSTD  60
SSMEKILERY EHYSYTERAL YSNEDNPQVP VSLVGKGLRR CSQDSEIRSR LUQFCAAFNF  120
PKKTNYASKV RNRQIGALNI IKURQRLKAY KRANGTLWGS NLTLUALKSS NILSSSLKVL  180
USIUDQERHS SWUIQFLSYK KRKNCCWSKT RPCRIWLKRR PKLWCRMQHG SSRTNPSIAL  240
HLLMLUFQIL SQLLPAEHFE QEQMEKNHLS RSUDUATLYF HHGCSVTLMA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-19174173MEF2 CHIMERA
6byy_B2e-19174173MEF2 CHIMERA
6byy_C2e-19174173MEF2 CHIMERA
6byy_D2e-19174173MEF2 CHIMERA
6bz1_A2e-19174173MEF2 CHIMERA
6bz1_B2e-19174173MEF2 CHIMERA
6bz1_C2e-19174173MEF2 CHIMERA
6bz1_D2e-19174173MEF2 CHIMERA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ0650970.0JQ065097.1 X Doritaenopsis hybrid cultivar MADS1 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.13e-43MIKC_MADS family protein