PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 325aa MW: 36592.6 Da PI: 7.1895

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_26147	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	9e-05	248	270	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ PEQU_26147 248 FMCRKCGKAFAVRGDWRTHEKNC 270 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.46E-6	230	268	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.6E-6	244	268	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.808	248	268	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
SMADPYSHFF KRHFSYYPFS PSNPPLPPPL PPQPSSFSLP SYSYYTNYNH NYNTFLQNTN 60 LNPPQSPPLS PPLREALPLL NQSPQNHQEI EAEAESKKKR ATFEDDEDED ETEGAVTVAL 120 HIGLPSPTAA DLISRISSAT VEEGHNHEQD DEDGSSNINI PLGCPTIGKL TKGQYWIPTP 180 SQILIGPTQF SCPVCCKTFN RYNNMQXLPA SGGAAACRNN IDHPRAKPLK DFRTLQTHYK 240 RKHGIKPFMC RKCGKAFAVR GDWRTHEKNC GKLWYCTCGS DFKHKRSLKD HIKAFGHGHA 300 AYGIDCFEED DDPASEIEQD LRGRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020583327.1	0.0	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-100	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A2I0WBL1	1e-165	A0A2I0WBL1_9ASPA; Protein TRANSPARENT TESTA 1
STRING	XP_008798774.1	1e-133	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-100	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]