PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_24639

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 320aa MW: 36228.5 Da PI: 8.0981

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_24639	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.2	3.3e-06	165	184	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r nL+ H+ PEQU_24639 165 FSCPVCFKTFNRYNNLQMHM 184 89*****************9 PP
2	zf-C2H2	12.6	0.00042	249	271	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k F + + ++H +++ PEQU_24639 249 FMCRKCSKAFAVRGDWRTHEKNC 271 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.31E-5	161	187	No hit	No description
SMART	SM00355	0.21	165	187	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	9.4E-6	165	184	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.159	165	192	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	167	187	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.16E-6	231	269	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.9E-5	236	269	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	73	249	269	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MVEPYTHLSM AYFHDHFLLS NPSLPSPYLP LLPPKSINNY PSPPSSPPML EALPLLKNEK 60 DLEKKNNKAV NFLINDEADQ QFVNDVESVT MKLHIGLPSP NAADLISATV SLAQEEGEKQ 120 GEESAVGEEA QVLLVRYHES LIGKLNKGQY WIPTPSQILL GPTQFSCPVC FKTFNRYNNL 180 QMHMWGHGSQ YRTGRQSLRG IQPTAMLKLP CYCCSPGCRN NIDHPRAKPL KDFRTLQTHY 240 KRKHGLKPFM CRKCSKAFAV RGDWRTHEKN CGKLWYCICG SDFKHKRSLK DHVKAFGCDG 300 HAACGVHCFD GDEELEEDIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020598890.1	0.0	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-116	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A2I0WXW7	0.0	A0A2I0WXW7_9ASPA; Protein TRANSPARENT TESTA 1
STRING	XP_008795700.1	1e-133	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-118	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]