PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 523aa MW: 58680 Da PI: 8.2126

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_21019	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.3e-05	355	374	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ PEQU_21019 355 FSCPVCLKTFNRYNNMQMHM 374 89*****************9 PP
2	zf-C2H2	11.8	0.00076	439	461	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+k F + + ++H +++ PEQU_21019 439 FTCRRCNKAFAVRGDWRTHEKNC 461 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.66	355	382	IPR007087	Zinc finger, C2H2
Pfam	PF12874	0.0026	355	374	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.2E-5	355	374	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.31	355	377	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	357	377	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.69E-6	420	459	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.0E-5	426	459	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	70	439	459	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	180	465	488	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009860	Biological Process	pollen tube growth
GO:0010500	Biological Process	transmitting tissue development
GO:1990058	Biological Process	fruit replum development
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence Send to blast
MSLPYDRCCH VRPLSPPFSH YRHHLLASAA FRLLPSQVII AFMTPPHLRP PLSPLGCHHP 60 SSRRCPLAEV IGATSQQSSF QVIPVFRLLS SLTTFGLLPL PSQAAIAVTS HAATAFRLQS 120 PFRHLHLLII VILDHLSISC HRHRLRPTPV TIASDQIHCW LFRSLPPLAS AVISTHHHLT 180 AMMSLSPFQE PATMTDPYTN FFKGYFNHFP FSSNSPPPPP PYPHPFLPPN SSLHHNHCTY 240 TNCNNDPPPS PPLREPLPLL RQSPASSTLH HKEELLNEED EEEVTVALHI GLPSPNAADL 300 ISKVSCTQQG GEETEVVEEE AEVPLAYTEN SIGKLNKGQY WIPTPSQILI GPTQFSCPVC 360 LKTFNRYNNM QMHMWGHGSQ YRKGPESLRG IQPTAMLRLP CYCCAPGCRN NIDHPRSKPL 420 KDFRTLQTHY KRKHGIKPFT CRRCNKAFAV RGDWRTHEKN CGKIWYCVCG SDFKHKRSLK 480 DHVKAFGHGH AAYGVDFLDE DDEPSSEIEQ DGGSNGVQSC EGR

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence Send to blast

MSLPYDRCCH VRPLSPPFSH YRHHLLASAA FRLLPSQVII AFMTPPHLRP PLSPLGCHHP  60
SSRRCPLAEV IGATSQQSSF QVIPVFRLLS SLTTFGLLPL PSQAAIAVTS HAATAFRLQS  120
PFRHLHLLII VILDHLSISC HRHRLRPTPV TIASDQIHCW LFRSLPPLAS AVISTHHHLT  180
AMMSLSPFQE PATMTDPYTN FFKGYFNHFP FSSNSPPPPP PYPHPFLPPN SSLHHNHCTY  240
TNCNNDPPPS PPLREPLPLL RQSPASSTLH HKEELLNEED EEEVTVALHI GLPSPNAADL  300
ISKVSCTQQG GEETEVVEEE AEVPLAYTEN SIGKLNKGQY WIPTPSQILI GPTQFSCPVC  360
LKTFNRYNNM QMHMWGHGSQ YRKGPESLRG IQPTAMLRLP CYCCAPGCRN NIDHPRSKPL  420
KDFRTLQTHY KRKHGIKPFT CRRCNKAFAV RGDWRTHEKN CGKIWYCVCG SDFKHKRSLK  480
DHVKAFGHGH AAYGVDFLDE DDEPSSEIEQ DGGSNGVQSC EGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020588066.1	0.0	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-129	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A2I0VYQ3	0.0	A0A2I0VYQ3_9ASPA; Protein TRANSPARENT TESTA 1
STRING	XP_008795700.1	1e-156	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-125	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]