PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

LBD

Protein Properties

Length: 238aa MW: 25189.3 Da PI: 7.896

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_15646	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128	4.2e-40	27	127	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+++C++apyf ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++++eA+ r+rdPvyG+v++i++lqqq+ +l+ael++l+ PEQU_15646 27 PCGACKFLRRKCVSGCIFAPYFDSDQgAAHFAAVHKVFGASNVSKLLLHIPAHKRPDAVVTICFEAQSRLRDPVYGCVAHIFALQQQVVSLQAELSYLQ 125 7*********************9989******************************************************************999 PP DUF260 99 ee 100 ++ PEQU_15646 126 SH 127 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.866	26	128	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.5E-39	27	125	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010089	Biological Process	xylem development
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MSTGSTSSSG GAGGSGGGSG VGGGGGPCGA CKFLRRKCVS GCIFAPYFDS DQGAAHFAAV 60 HKVFGASNVS KLLLHIPAHK RPDAVVTICF EAQSRLRDPV YGCVAHIFAL QQQVVSLQAE 120 LSYLQSHLAT LELPTPPPLP PPPLPQANAF SMPELLSSSN LPSHSNLDLS WLFDPQFQMQ 180 QQNRPAELRQ PQQLERSGER QVGESSGSHG GGDLQALARE LIERHRSSSS DHSSKLPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-37	23	128	7	111	LOB family transfactor Ramosa2.1
5ly0_B	8e-37	23	128	7	111	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020572426.1	1e-172	LOB domain-containing protein 30-like
Swissprot	O81323	4e-70	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A2I0VRW6	9e-91	A0A2I0VRW6_9ASPA; LOB domain-containing protein 30
STRING	GSMUA_Achr5P11330_001	1e-84	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3346	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	6e-66	LBD family protein

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]