PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_11578
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 384aa    MW: 40898.6 Da    PI: 6.2362
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_11578genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS167.11.4e-51273093297
        GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 elLl++A+ v++gdl+   ++Larl+ l  s +g+p++R+a++f+ AL + l        + +p  + s  + ++++aa+k+fs++sPi++f  +taNq
  PEQU_11578  27 ELLLRAAHSVETGDLNYSLSILARLNFLlHSCTGTPLRRAAFHFKDALLSLLPI----PDHPIPEPPLSAIELVRRIAAHKAFSDISPIPQFNSFTANQ 121
                 79************************9989*******************99987....44566777777778*************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                 ++le+++ + ++H iDfd++ G QW ++ + La+ +     +pp lRiT+v+s   +++ e+   +++L++fA+ +g+++ ++++   rl    + ++r
  PEQU_11578 122 TLLESLDAAPALHLIDFDLGLGSQWSSFAHDLAAHSraahLPPPPLRITAVVS---DETAETAIAADNLRDFARGIGLRLTIEFV---RL--TAICRIR 212
                 *********************************65544666799*********...578999999*******************7...44..455899* PP

        GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleak...lpreseerikvErell 290
                 +  gEa+aV l  +  rl            +vL+++++  ++vv vv+ e  + +++sF +rf++ ley++a ++ +ea+   +++ +e+++ +Er+l+
  PEQU_11578 213 FAAGEAVAVVLTPANIRLN-----G----VSVLRFIRGAAARVVLVVDGEGYCgGAGSFRQRFANGLEYFAAAMEVVEAGtaaVGAGEETARRIERVLF 302
                 ***********99888885.....3....46**********************8999********************7763445667799********* PP

        GRAS 291 greivnv 297
                 +++i  +
  PEQU_11578 303 RPRIFAA 309
                 **99765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.9711364IPR005202Transcription factor GRAS
PfamPF035145.0E-4927309IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MDEPCSFFPD LSHLIPPPPD PENSHLELLL RAAHSVETGD LNYSLSILAR LNFLLHSCTG  60
TPLRRAAFHF KDALLSLLPI PDHPIPEPPL SAIELVRRIA AHKAFSDISP IPQFNSFTAN  120
QTLLESLDAA PALHLIDFDL GLGSQWSSFA HDLAAHSRAA HLPPPPLRIT AVVSDETAET  180
AIAADNLRDF ARGIGLRLTI EFVRLTAICR IRFAAGEAVA VVLTPANIRL NGVSVLRFIR  240
GAAARVVLVV DGEGYCGGAG SFRQRFANGL EYFAAAMEVV EAGTAAVGAG EETARRIERV  300
LFRPRIFAAG AAGGGTGREX XXXXXXXXGG GGGGGGVPRG EEGGGIGAEL EGKGDVCHVG  360
MEVQLRPEGE FWVRLVALRL MIAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-163131425308Protein SCARECROW
5b3h_A7e-163131424307Protein SCARECROW
5b3h_D7e-163131424307Protein SCARECROW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020580278.10.0scarecrow-like protein 15
TrEMBLA0A3G2CI371e-158A0A3G2CI37_CYMEN; Scarecrow-like protein 15-like
STRINGXP_008795618.11e-78(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17202711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.13e-42GRAS family protein