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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_06760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 226aa MW: 25205.1 Da PI: 9.4179 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.2 | 1.9e-22 | 17 | 63 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 krien+ rqv fskRr+g++KKA ELS+LC+ae+ +++fs+ gk + PEQU_06760 17 KRIENEEARQVCFSKRRAGLFKKATELSILCGAEIGIVVFSPAGKPF 63 79*****************************************9855 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.0E-34 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.562 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.45E-27 | 9 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.20E-36 | 10 | 77 | No hit | No description |
PRINTS | PR00404 | 1.3E-20 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-26 | 18 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-20 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-20 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009559 | Biological Process | embryo sac central cell differentiation | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MVRKKRQSMG RQKIAMKRIE NEEARQVCFS KRRAGLFKKA TELSILCGAE IGIVVFSPAG 60 KPFSFGHPSL DYITRRFVGG GPAVVGQLCG SFVEGEKLQL LNQEHAGLME KLEEARRIRA 120 ELEADIAAQP VGPGLPCDVE VHEMSLEELD SFQKALEELR RKVTNRREEL DIQSMDTKMI 180 RPIVPPRLGY GGGYLGGYNG LYLTSGPAGG FYRHRPDLTV GFPVWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-15 | 9 | 78 | 1 | 70 | MEF2 CHIMERA |
6byy_B | 1e-15 | 9 | 78 | 1 | 70 | MEF2 CHIMERA |
6byy_C | 1e-15 | 9 | 78 | 1 | 70 | MEF2 CHIMERA |
6byy_D | 1e-15 | 9 | 78 | 1 | 70 | MEF2 CHIMERA |
6bz1_A | 1e-15 | 9 | 78 | 1 | 70 | MEF2 CHIMERA |
6bz1_B | 1e-15 | 9 | 78 | 1 | 70 | MEF2 CHIMERA |
6bz1_C | 1e-15 | 9 | 78 | 1 | 70 | MEF2 CHIMERA |
6bz1_D | 1e-15 | 9 | 78 | 1 | 70 | MEF2 CHIMERA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020584544.1 | 1e-165 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A2I0VT52 | 1e-106 | A0A2I0VT52_9ASPA; Agamous-like MADS-box protein AGL61 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 4e-30 | AGAMOUS-like 61 |