PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

PEQU_00678

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

CO-like

Protein Properties

Length: 343aa MW: 36539.9 Da PI: 6.3941

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_00678	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.6	2.3e-07	17	61	3	39
zf-B_box 3 erkCpeHeeke..lqlfCedCqqllCedClleeHkg.......Htv 39 +rkC+ ++ + + lfC+ + +lC++C H g H++ PEQU_00678 17 ARKCDGCKGPPaaAVLFCRADAAFLCATCDARVH-GanklasrHER 61 789***86667****************999.44667777765 PP
2	zf-B_box	25.4	2.9e-08	62	107	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + C+ +e+ ++ C+ + lC C +H H++vp+ PEQU_00678 62 VWLCEVCEQAPAAVTCKADAAALCSACDADIHTAnplasrHQRVPV 107 689*****************************66899999999986 PP
3	CCT	69.7	7.4e-24	252	295	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++ PEQU_00678 252 REARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT 295 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	1.0E-13	15	64	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.798	15	64	IPR000315	B-box-type zinc finger
CDD	cd00021	9.30E-8	18	64	No hit	No description
PROSITE profile	PS50119	10.537	60	107	IPR000315	B-box-type zinc finger
Pfam	PF00643	5.1E-6	62	107	IPR000315	B-box-type zinc finger
CDD	cd00021	1.98E-9	63	107	No hit	No description
SMART	SM00336	8.9E-9	65	107	IPR000315	B-box-type zinc finger
Pfam	PF06203	6.5E-18	252	294	IPR010402	CCT domain
PROSITE profile	PS51017	16.906	252	294	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MGGKGVEGGG AYWELEARKC DGCKGPPAAA VLFCRADAAF LCATCDARVH GANKLASRHE 60 RVWLCEVCEQ APAAVTCKAD AAALCSACDA DIHTANPLAS RHQRVPVVPL FESPVPDPSL 120 LYDADDGEED SAGAASWILP APAKDTVQGK MKSADCFTDV HPYLDLEYGS SVEAGIYQSD 180 SVVPAGAGAS SGLIMLDFGK SKPKTHSYTI SHSMSSSEVA VVPDGGGSAM ADVSNCAGGS 240 GGVGERSTMM DREARVMRYR EKRKNRRFEK TIRYASRKAY AETRPRIKGR FAKRTEVELE 300 IDQIYSSAGA PTARFLXXXX XAWPAATAAF IESVQDYGVV PSF

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MGGKGVEGGG AYWELEARKC DGCKGPPAAA VLFCRADAAF LCATCDARVH GANKLASRHE  60
RVWLCEVCEQ APAAVTCKAD AAALCSACDA DIHTANPLAS RHQRVPVVPL FESPVPDPSL  120
LYDADDGEED SAGAASWILP APAKDTVQGK MKSADCFTDV HPYLDLEYGS SVEAGIYQSD  180
SVVPAGAGAS SGLIMLDFGK SKPKTHSYTI SHSMSSSEVA VVPDGGGSAM ADVSNCAGGS  240
GGVGERSTMM DREARVMRYR EKRKNRRFEK TIRYASRKAY AETRPRIKGR FAKRTEVELE  300
IDQIYSSAGA PTARFLXXXX XAWPAATAAF IESVQDYGVV PSF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1	9	GGKGVEGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ469986	0.0	FJ469986.1 Phalaenopsis hybrid cultivar CONSTANS-like protein (COL) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020598118.1	0.0	zinc finger protein CONSTANS-LIKE 4-like
Swissprot	Q9FHH8	1e-79	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	E6Y7M5	0.0	E6Y7M5_9ASPA; CONSTANS-like protein
STRING	XP_008789696.1	1e-124	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2191	32	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	8e-66	CONSTANS-like 5

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]