PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s946471g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARR-B
Protein Properties Length: 561aa    MW: 62152.5 Da    PI: 4.9666
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s946471g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.73e-24181234155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr +W+ e+H+ F++av++L G+++A+P++i +lm+v gLt+e+++SHLQkYRl
  PDK_30s946471g003 181 KPRFVWSLEMHALFLKAVHHL-GIDRAVPRKIQDLMNVSGLTRENIASHLQKYRL 234
                        79*******************.********************************8 PP
2Response_reg68.43.2e-2349220108
                        HTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHH CS
       Response_reg  20 kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelv 108
                        k+++  v+++ ++  al+ll+e++  +Dl++ D++mp+mdG+ ll+ ir e  ++p+i+++a ge +++l+ + +Ga d+l+Kp+  eel+
  PDK_30s946471g003   4 KKRM-TVTATLNALTALKLLRENRdnYDLVISDVRMPEMDGFGLLEAIRLEM-DVPVIMLSADGEVNTVLKGIAYGAVDYLVKPVRLEELR 92 
                        6677.99*************999889**********************9976.***********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011034.909199IPR001789Signal transduction response regulator, receiver domain
SMARTSM004483.9E-15195IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23003.2E-293119No hitNo description
CDDcd001562.09E-25398No hitNo description
PfamPF000722.8E-19492IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521728.97E-277101IPR011006CheY-like superfamily
SuperFamilySSF466891.18E-17178238IPR009057Homeodomain-like
PROSITE profilePS5129410.815178237IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-25179238IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-22181234IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MKEKKRMTVT ATLNALTALK LLRENRDNYD LVISDVRMPE MDGFGLLEAI RLEMDVPVIM  60
LSADGEVNTV LKGIAYGAVD YLVKPVRLEE LRLIWKHVVK KSLHGTKGAH SLGDRNNHEM  120
ALEDDLEEEF DDNHEIELED NHDRELEAGH EQELEDGHTT KVMRKGRERE RCSDGSSTQK  180
KPRFVWSLEM HALFLKAVHH LGIDRAVPRK IQDLMNVSGL TRENIASHLQ KYRLALKKNG  240
IRMDLQYYGG LGPIGYGGSH PSSLLLPFNQ QLDSNVSTLG GLKVACLPPS MNNPDSVHQQ  300
FTANPQAGQL RMQQFGYASN PDVVGTSNTQ SGFQFPAYHN LPASPNQVDG HMQNSFHNPC  360
SSSGNPGPNS GPQPGLLSNP SMMGTSNAPS GFNSLSCQFL TSPDQVDGSV QNSSYNPCAT  420
SGHPGPSSGF QPGCSSNDYH DILENITVAE LNAILPMQYE QNKFVDHTGA VMGMQVSGDS  480
VDLQSCPDGE KFKEISNPEL TKHLSEHSPS ETEFDMDKCD FMDDIDTFFK QWLELLDSIL  540
RQDQNSPFSE LEKSLSLVDI N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-23177238162ARR10-B
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026664788.10.0two-component response regulator ARR14-like
RefseqXP_026664789.10.0two-component response regulator ARR14-like
TrEMBLA0A3Q0ID700.0A0A3Q0ID70_PHODC; two-component response regulator ARR14-like
STRINGXP_008805439.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5075122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-55response regulator 2