PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s849011g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | AP2 | ||||||||
Protein Properties | Length: 635aa MW: 69272.1 Da PI: 7.2199 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.1 | 1.9e-12 | 289 | 345 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g PDK_30s849011g001 289 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 345 78*******************77776664346655.77******************98 PP | |||||||
2 | AP2 | 45.7 | 1.6e-14 | 390 | 439 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g PDK_30s849011g001 390 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 439 9***************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-9 | 289 | 345 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-14 | 289 | 354 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.14E-19 | 289 | 353 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-12 | 290 | 354 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-22 | 290 | 359 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.359 | 290 | 353 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-6 | 291 | 302 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-17 | 388 | 448 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.04E-24 | 388 | 449 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.1E-18 | 389 | 447 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-33 | 389 | 453 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.177 | 389 | 447 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-9 | 390 | 439 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-6 | 429 | 449 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 635 aa Download sequence Send to blast |
MNMEVSSEPH HQPNHQSHHH QARPAHAAVS SLVPCSFFRS PPQLDSSGLC YGVEGETVGL 60 YSLWSVMPLK SDGSLCIMEA LGRSQQQGMV PSPSPKLEDL LGGGPNMGSH HQFGNNDGEA 120 MALSLDSVCY HQNSQPSGGR SHPLELLQVQ QHQQEHQYFQ PLQEGLCSGL AGHGVYHGPL 180 EEPMADDGIP SLKNWVAGHY NAVNNGLGEE GGFGSSSVGT KGYGDLQSLS LSMSPGTQSS 240 CVPAAKQISP AATTECMILD TPKKRGTGKG GQKQPVHRKS IDTFGQRTSQ YRGVTRHRWT 300 GRYEAHLWDN SCKKEGQTRK GRQGGYDMEE KAARAYDLAA LKYWGPSTHI NFPLESYQAE 360 LEEMKTMSRQ EYVAHLRRKS SGFSRGASMY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF 420 STQEEAAEAY DIAAIKFRGV NAVTNFDITR YDVEKIMASS TLLSGELARR TKAIEAGIDA 480 SSTQKSRREL DLAEENNSCG SDWKMVLYQS PQHISQPSES LNHNPVASMD DYRSSTPLLA 540 ALHGTAGMET VSSVEGLEDS GKIGNKHISN SSSLVTSLGS SREGSPDRPG LSMLYSKPSP 600 NFVRDAPMSS WIPSTQIRPT ISLAQMPVFA AWNDA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008785732.1 | 0.0 | AP2-like ethylene-responsive transcription factor CRL5 | ||||
Swissprot | Q38914 | 1e-153 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A2H3XLU5 | 0.0 | A0A2H3XLU5_PHODC; AP2-like ethylene-responsive transcription factor CRL5 | ||||
STRING | XP_008785732.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-124 | AP2 family protein |