PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s847161g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARR-B
Protein Properties Length: 703aa    MW: 76732.6 Da    PI: 6.973
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s847161g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.11.3e-25230280152
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                        kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQ+
  PDK_30s847161g004 230 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQM 280
                        79*******************.*****************************8 PP
2Response_reg35.35.8e-135815330109
                        SSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH.HHHT.............TTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HH CS
       Response_reg  30 ddgeealellkekd..pDlillDiempgmdGlellkei.reee.............pklpiivvtahgeeedalealkaGakdflsKpfdpe 105
                        +++++al ll+e++  +D+++ D+ mp+mdG++ll+    e +              + +  v++a g  + + + +k Ga d+l Kp+ +e
  PDK_30s847161g004  58 QKATKALSLLRERKggYDVVISDVHMPDMDGYKLLELVgLEMDlpviisfqlgynlLDFQFAVMSADGRTSAVMRGIKHGACDYLIKPVRIE 149
                        5678899999999999********************997666674554444444444488899***************************** PP

                        HHHH CS
       Response_reg 106 elvk 109
                        el +
  PDK_30s847161g004 150 ELKN 153
                        *987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011019.1526159IPR001789Signal transduction response regulator, receiver domain
SMARTSM004484.9E-537155IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363925.3E-12953661IPR017053Response regulator B-type, plant
PfamPF000721.7E-957153IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.0E-2559180No hitNo description
SuperFamilySSF521721.99E-1861170IPR011006CheY-like superfamily
CDDcd001561.24E-1563159No hitNo description
Gene3DG3DSA:1.10.10.604.0E-26227280IPR009057Homeodomain-like
SuperFamilySSF466892.15E-16228285IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-22230280IPR006447Myb domain, plants
PfamPF002491.3E-6232281IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MTSRAQWSNL TVVLSLTFNY EPVMRMNKYG NGNGCQGKLL EHMVKGTKEF EKASSDEQKA  60
TKALSLLRER KGGYDVVISD VHMPDMDGYK LLELVGLEMD LPVIISFQLG YNLLDFQFAV  120
MSADGRTSAV MRGIKHGACD YLIKPVRIEE LKNIWQHVIR KKWNENRDLE HSGTMEESDR  180
FRRAVDDTEY ASSVNDGTDG TWKSQKKKRD AKEDEDDGEL DNEDPSASKK PRVVWSVELH  240
QQFVSAVNQL GIDKAVPKRI LELMNVPGLT RENVASHLQM ILIVIGKLFQ ALKFRLYLKR  300
LSGVAQNQSV LPNSFCGSVE PNAKLGSLGR FDFQALAASG QIPPQTLAAL HVELLGRPSG  360
SLVLPAVDQP VLLHASMRAH KCIPVEQGVA FGQPLLKCQS STQKQLPQSN IVVEDMSSGF  420
SAWSSNQFSA TGTAGNLGAV NKSQSGNLLV QMLQQQHPYP VLPESNHAIN VQPSCLIAPS  480
QSSNGFQIGN SHVPINPNST VDTALSSTSF QVRSNALPVN QNSNYTNSST VMDYNLISSQ  540
SHNVPLDMEQ VSNGDLKNVG VLNGYSVPGS VSPSVSSCSI RTESCTGWQV QNSIVNVAPA  600
SRLPTHLPSL CIQGSDSKTS ALPDQGRGRN LGFVGKGTCI PSRFAVDDNE SPTNDPSHWN  660
TCIGNERVRV KQETVLDFGD GSGVENSKLP HFSSNDLMGV LSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-20226302164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008812974.10.0two-component response regulator ORR21-like isoform X1
RefseqXP_008812975.10.0two-component response regulator ORR21-like isoform X2
SwissprotA2XE311e-150ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-150ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A2H3ZFD90.0A0A2H3ZFD9_PHODC; Two-component response regulator
TrEMBLA0A2H3ZG410.0A0A2H3ZG41_PHODC; Two-component response regulator
STRINGXP_008812974.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-91response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]