PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s838351g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARR-B
Protein Properties Length: 627aa    MW: 67877.2 Da    PI: 6.2028
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s838351g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.14e-28156209155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr++W+ eLH++Fv+av+qL G ++A+Pk+il+lm+v+gLt+e+v+SHLQk+Rl
  PDK_30s838351g003 156 KPRVVWSVELHQQFVNAVNQL-GVDRAVPKRILDLMDVPGLTRENVASHLQKFRL 209
                        79*******************.********************************8 PP
2Response_reg531.9e-1838033109
                        HHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
       Response_reg  33 eealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                        + al +l+e++  +D+++ D+ mp+mdG++ll+ i  e  +lp+i+++a    + + + +k Ga d+l+Kp+ +eel +
  PDK_30s838351g003   3 TRALSILRESKggFDVVISDVHMPDMDGFKLLELIGLEM-DLPVIMMSADMRTSIVMQGIKHGACDYLAKPVRMEELKN 80 
                        5689999999999**********************6644.8***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011030.832186IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23006.5E-293106No hitNo description
SuperFamilySSF521724.27E-244112IPR011006CheY-like superfamily
PfamPF000722.2E-15480IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.23E-18585No hitNo description
PROSITE profilePS5129411.052153212IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-29153214IPR009057Homeodomain-like
SuperFamilySSF466895.55E-19154213IPR009057Homeodomain-like
TIGRFAMsTIGR015578.5E-24156209IPR006447Myb domain, plants
PfamPF002491.3E-6158207IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MATRALSILR ESKGGFDVVI SDVHMPDMDG FKLLELIGLE MDLPVIMMSA DMRTSIVMQG  60
IKHGACDYLA KPVRMEELKN IWQHVVRKKW KENREAEHSD SFEDTDHNRQ VIDDAEKTSS  120
GNDATDSICK SQKKRRDDCK EDDEGEPDNM DSSSKKPRVV WSVELHQQFV NAVNQLGVDR  180
AVPKRILDLM DVPGLTRENV ASHLQKFRLY LKRLSSAQHH TGLPISLPGA GSNAEVPSLG  240
SLDFQTLTIS GQIPPQTLAA WQDELLGRPA GSLGMPEMDQ SILPQASIRG AKSVPVEHGI  300
VFGQPLRKCQ ANMPRQFPQS NVAVRGLSSG FPTWSSNNHG AVVSGSNLGG LSSTQNSNLL  360
VPMLQQEQPH PVLSESHRAM TVQPSCLVLP SQVSKRFQVR EKAVLVDQNS VVVPSQSSTS  420
LQAENNPTPM NQTSIFAPPR SSASMQAGNN LSLIGLNSSS TSFQGGNDPG LINQNCMLVP  480
PQLLTSFQEG SGTAPLSYSS RYKNSSAIVD YSLLSSQSNN AQLGRAQVSD EGFKDITGAG  540
AVSQTLPNQG QGRNLGLPNL SNIRGGETMS QTLPDQGQGR SLGFIGQGTR MPCQFAVDDI  600
KSPTNGSGPD DDRDILNQAF FGFNGDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-23152215164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775607.10.0LOW QUALITY PROTEIN: two-component response regulator ORR21
SwissprotA2XE310.0ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S70.0ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A2H3WYF00.0A0A2H3WYF0_PHODC; LOW QUALITY PROTEIN: two-component response regulator ORR21
STRINGXP_008775607.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-90response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]