PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s784071g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family AP2
Protein Properties Length: 437aa    MW: 48585 Da    PI: 9.0693
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s784071g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.44.8e-10121171755
                AP2   7 rwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +w++++gr++A+++d  ++  g  rk  + g ++t+e+Aa+a++ a++k++g
  PDK_30s784071g001 121 SWHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDTEEKAARAYDLAALKYWG 171
                        7**************77776664335555.77******************98 PP
2AP223.91e-07216248338
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 
                        y+GV+++++ grW A+I  +s    +k  +lg+f  
  PDK_30s784071g001 216 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSK 248
                        9***************999754...4*******976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-15111185IPR001471AP2/ERF domain
PROSITE profilePS5103215.804111179IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-12121180IPR016177DNA-binding domain
PfamPF008475.2E-7121171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-10123180IPR001471AP2/ERF domain
CDDcd000184.38E-15123179No hitNo description
SuperFamilySSF541717.85E-6214249IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.5E-5215249IPR001471AP2/ERF domain
SMARTSM003800.0012215264IPR001471AP2/ERF domain
PROSITE profilePS510329.018215250IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MKSMNNNSWL GFSLSPHMSM EVSGDPHHQP SSQSHHHQSQ PTPAAVSCSS FFPSPPHLNG  60
SDICYEVGEN GGFYSQLSSM PLRSDGSLCI MEALSRSQRE EHLSTEVSRG QYLGVLSSFH  120
SWHRWTGRYE AHLWDNSCKK EGQTRKGRQG GYDTEEKAAR AYDLAALKYW GASTHINFPL  180
EDYQEELGDM KNMSRQEYVA HLRRKSSGFS RGASMYRGVT RHHQHGRWQA RIGRVSGNKD  240
LYLGTFSKKQ RKISCLLKFS KKKRYDVEKI MASSTLLAAE LARRNKDAES LNDAPPLAQN  300
SNRELNLTED NSSGGSDWKM SLYPSSQQTS PISEEHSEKL ISGADAFSNP CYSTSLHGLV  360
GMHTEGSSHL SNPSSLVHSL SNSREGSPDR SGLSMLFARP PRKVINSTSA TSSIPSTQLR  420
SAMSMAHMPV FAAWTDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250263RKISCLLKFSKKKR
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008796976.10.0AP2-like ethylene-responsive transcription factor CRL5
SwissprotQ84Z021e-115CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2H3YD110.0A0A2H3YD11_PHODC; AP2-like ethylene-responsive transcription factor CRL5
STRINGXP_008796976.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.12e-84AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]