PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s730471g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 299aa    MW: 33310.4 Da    PI: 8.3893
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s730471g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.7e-161462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W++eEd +l+++ +++G+g +W + +++ g++R++k+c++rw++yl
  PDK_30s730471g002 14 KGPWSPEEDRQLKEYMEKYGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                       79*********************************************97 PP
2Myb_DNA-binding41.33.5e-1369111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g +T +Ed  + ++ +  G++ W+ Ia++++ gRt++++k++w++
  PDK_30s730471g002  69 GDFTDDEDRTICNLYASIGSR-WSVIASHLP-GRTDNDIKNYWNT 111
                        789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.245962IPR017930Myb domain
SuperFamilySSF466899.9E-2811109IPR009057Homeodomain-like
SMARTSM007171.0E-121364IPR001005SANT/Myb domain
PfamPF002495.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-241569IPR009057Homeodomain-like
CDDcd001676.01E-101662No hitNo description
PROSITE profilePS5129421.7763117IPR017930Myb domain
SMARTSM007171.9E-1267115IPR001005SANT/Myb domain
PfamPF002496.6E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2370117IPR009057Homeodomain-like
CDDcd001672.63E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDRQLKEYME KYGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FTDDEDRTIC NLYASIGSRW SVIASHLPGR TDNDIKNYWN TKLKKKLLGF  120
PPSQRKPYQQ QQQQHLFPSN LDIGSVSFSS PPSLEDMQIS QYLLNPIATP TFSSSLPQAS  180
KHQFRVKDNR SLLMFGTEQS CSSSDGSCNQ ISCGSNVDYE LYNGGQQLGS LDSFLHCGTQ  240
GTEKLLLGGG GGSSECNIEE IKPLVSPINW YNSPFGDDLN GAATKDVSLK TQGRATYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008800556.10.0transcription factor MYB36-like
TrEMBLA0A2H3YLH30.0A0A2H3YLH3_PHODC; transcription factor MYB36-like
STRINGXP_008800556.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-74myb domain protein 36