PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s693742g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 813aa    MW: 88754.1 Da    PI: 6.5496
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s693742g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-182683457
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PDK_30s693742g001 26 YVRYTPEQVEALERVYSECPKPSSMRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 83
                       6789****************************************************97 PP
2START168.83.6e-531743812204
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l vi +g  g +
  PDK_30s693742g001 174 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCLDVLTVIPTGngGNI 264
                        68999*****************************************************.8888888888*********************** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l++++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p     +++vRae+lpSg+li+p+++g+s +++v+h+dl+++++++
  PDK_30s693742g001 265 ELIYMQTYAPTTLASaRDFWTLRYTTGLEDGSLVICERSLTPSTGGPAgppAPNFVRAEMLPSGYLIRPCEGGGSMIHIVDHIDLDAWSVPE 356
                        ******************************************999998888***************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXX CS
              START 180 llrslvksglaegaktwvatlqrqc 204
                        +lr+l++s  + ++k++ a+l++ +
  PDK_30s693742g001 357 VLRPLYESPKILAQKMTIAALRNIR 381
                        *********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.9E-191183IPR009057Homeodomain-like
PROSITE profilePS5007115.582084IPR001356Homeobox domain
SMARTSM003894.7E-152288IPR001356Homeobox domain
CDDcd000861.25E-162585No hitNo description
SuperFamilySSF466891.03E-162587IPR009057Homeodomain-like
PfamPF000463.3E-162683IPR001356Homeobox domain
CDDcd146861.94E-677116No hitNo description
PROSITE profilePS5084825.927164364IPR002913START domain
CDDcd088754.07E-68168384No hitNo description
Gene3DG3DSA:3.30.530.202.7E-24172367IPR023393START-like domain
SMARTSM002341.0E-47173383IPR002913START domain
SuperFamilySSF559613.57E-39174384No hitNo description
PfamPF018525.1E-51174381IPR002913START domain
SuperFamilySSF559613.71E-5421503No hitNo description
SuperFamilySSF559613.71E-5536610No hitNo description
PfamPF086702.9E-21737812IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MAMVVAGQGV GKEAGKMQQG MEAGKYVRYT PEQVEALERV YSECPKPSSM RRQQLIRECP  60
ILANIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVY  120
ENGYMRQQLH NASVATTDTS CESVVTSGQH HHQQNPAPQH PQRDANNPAG LLAIAEETLA  180
EFLSKATGTA VDWVQMVGMK PGPDSIGIIA VSHNCSGVAA RACGLVSLEP TKVAEILKDR  240
PSWYRDCRCL DVLTVIPTGN GGNIELIYMQ TYAPTTLASA RDFWTLRYTT GLEDGSLVIC  300
ERSLTPSTGG PAGPPAPNFV RAEMLPSGYL IRPCEGGGSM IHIVDHIDLD AWSVPEVLRP  360
LYESPKILAQ KMTIAALRNI RQIALETSGE ISYGGGRQPA VLRTFSQRLS RGFNDAVNGF  420
ADDGWSLMGS DGVEDVTIAI NASPNKLLGS HVNSSTMFSA MGGGILCAKA SMLLQNVPPA  480
LLVRFLREHR SEWADCAVDA YSAASLRACP YAVPGVRASS GFLGGQVILP LAHTIEHEEF  540
LEVIRLEGHG FNQDEVVLSR DMYLLQLCSG VDENAVGACA QLVFAPIDES FADDAPLLPS  600
GFRVIPLDPK TDAPTANRTL DLASTLEVGS GAAARSSSEN ASDTYNLRSV LTIAFQFTYE  660
NHLRESVAAM ARQYVRSVVA SVQRVAMAIA PSRLGSQIGM KHPPGSPEAH TLARWISRSY  720
RFHTGVELLR ADSQAGTLQD VTLEKILDDS GRKVLCSEFN KIMQEGSAYL PAGICLSSMG  780
RPVSYEQAVA WKVLNDEDSH HCLAFMFVNW SFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008794452.10.0homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2H3Y7760.0A0A2H3Y776_PHODC; homeobox-leucine zipper protein HOX32
STRINGXP_008794452.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]