PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s668471g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

AP2

Protein Properties

Length: 644aa MW: 70004.6 Da PI: 7.1771

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s668471g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39	2e-12	312	368	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g PDK_30s668471g001 312 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 368 78*****************77776664346655.77****************98 PP
2	AP2	47.2	5.6e-15	413	462	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I +s +k +lg+f t eeAa+a++ a+ k++g PDK_30s668471g001 413 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 462 9*************999754...5**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	5.46E-19	312	376	No hit	No description
SuperFamily	SSF54171	2.48E-14	312	377	IPR016177	DNA-binding domain
Pfam	PF00847	1.1E-9	312	368	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	17.359	313	376	IPR001471	AP2/ERF domain
SMART	SM00380	1.3E-22	313	382	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.4E-12	313	377	IPR001471	AP2/ERF domain
CDD	cd00018	3.63E-21	411	465	No hit	No description
SuperFamily	SSF54171	1.11E-14	411	466	IPR016177	DNA-binding domain
PROSITE profile	PS51032	17.543	412	476	IPR001471	AP2/ERF domain
SMART	SM00380	1.3E-25	412	476	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.6E-15	412	466	IPR001471	AP2/ERF domain
Pfam	PF00847	1.4E-9	413	462	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence Send to blast
MKSMNNNNWL GFSLSPHMSM EVSADPHQQP NSQSHHHQSQ PAPAAVSSGN FFLSPPHLSS 60 SGICYGVGEN GGFYSQLSSM PLKSDGSLCI MEALSRSQQE GMVPSPFPKL EDFLGCGPNM 120 GTHQYGNSDR GAMALSLDSM YYHQNPESEG NRGHPLDLLQ QPYRQHLQVQ QQQQQPPPPY 180 FQPLQEGMCS VLTGHEMYQP PLEEEQMGGG GIPGLKNWVT RSFGAGNNGL GEEGGVGSGG 240 PLGAMGYGDL QSLSLSMSPG SQSSCVTAPQ HIPPPANDYM ALDGSKKRGT GKGGQKQPVH 300 RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ TRKGRQGGYD MEEKAARAYD 360 LAALKYWGPS THINFPLEDY QQELEEMKNM SRQEYVAHLR RKSSGFSRGA SMYRGVTRHH 420 QHGRWQARIG RVSGNKDLYL GTFSTQEEAA EAYDIAAIKF RGVNAIMASS TLLSGELARK 480 NKDAEARDDA PSVQNSSREL NLTEDNSSGG SDWKMSLYQS PHQTSPISEE HGGQLIPGGD 540 AFRSPSYSTS LHGLVGMDTV GSAQGIDNSG NLGNAHLSNA SSLVTSSSNS REGSPDRGGL 600 CMLFAKPSPR LVNSTPVNSW IPSTGLRTTM PMSHMPVFAA WTDS

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence Send to blast

MKSMNNNNWL GFSLSPHMSM EVSADPHQQP NSQSHHHQSQ PAPAAVSSGN FFLSPPHLSS  60
SGICYGVGEN GGFYSQLSSM PLKSDGSLCI MEALSRSQQE GMVPSPFPKL EDFLGCGPNM  120
GTHQYGNSDR GAMALSLDSM YYHQNPESEG NRGHPLDLLQ QPYRQHLQVQ QQQQQPPPPY  180
FQPLQEGMCS VLTGHEMYQP PLEEEQMGGG GIPGLKNWVT RSFGAGNNGL GEEGGVGSGG  240
PLGAMGYGDL QSLSLSMSPG SQSSCVTAPQ HIPPPANDYM ALDGSKKRGT GKGGQKQPVH  300
RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ TRKGRQGGYD MEEKAARAYD  360
LAALKYWGPS THINFPLEDY QQELEEMKNM SRQEYVAHLR RKSSGFSRGA SMYRGVTRHH  420
QHGRWQARIG RVSGNKDLYL GTFSTQEEAA EAYDIAAIKF RGVNAIMASS TLLSGELARK  480
NKDAEARDDA PSVQNSSREL NLTEDNSSGG SDWKMSLYQS PHQTSPISEE HGGQLIPGGD  540
AFRSPSYSTS LHGLVGMDTV GSAQGIDNSG NLGNAHLSNA SSLVTSSSNS REGSPDRGGL  600
CMLFAKPSPR LVNSTPVNSW IPSTGLRTTM PMSHMPVFAA WTDS

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269\|PubMed:21481033}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin. {ECO:0000269\|PubMed:21481033}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010943602.1	0.0	AP2-like ethylene-responsive transcription factor CRL5
Swissprot	Q84Z02	1e-142	CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBL	A0A2H3YD11	0.0	A0A2H3YD11_PHODC; AP2-like ethylene-responsive transcription factor CRL5
STRING	XP_008796976.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP948	38	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-107	AP2 family protein

Publications ? help Back to Top
Kitomi Y, et al. The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. Plant J., 2011. 67(3): p. 472-84 [PMID:21481033] Li P,Xue H Structural characterization and expression pattern analysis of the rice PLT gene family. Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97 [PMID:21807632]