PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s6550940g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

WOX

Protein Properties

Length: 327aa MW: 37685.8 Da PI: 4.6334

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s6550940g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.1	9.6e-16	142	203	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r++R++ t+ q +L + +++ + p++ee++ ++++l ++te++V++WFqNr+++ek+ PDK_30s6550940g001 142 RKQRWSATPMQRLILDKIYHSgKISPNKEEIKWITSELsqhgEITESNVYNWFQNRKTREKR 203 89****************9899***********************************7 PP
2	Wus_type_Homeobox	82.1	6.7e-27	142	205	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+ tp Q iL+++y+sG +Pnkeei+ it+eL+++G+i++ NV++WFQNrk+Re++k+ PDK_30s6550940g001 142 RKQRWSATPMQRLILDKIYHSGKISPNKEEIKWITSELSQHGEITESNVYNWFQNRKTREKRKR 205 589***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.85E-15	135	204	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-11	135	208	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.908	139	204	IPR001356	Homeobox domain
SMART	SM00389	6.0E-10	141	208	IPR001356	Homeobox domain
Pfam	PF00046	1.6E-13	142	203	IPR001356	Homeobox domain
CDD	cd00086	4.32E-8	142	205	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MDWDLMEWMM ELQRNHAVEN AAADNVPNKV CSTDGKVGQG LVEEHQIVKS TDGSQELKEA 60 GEETTGKAGR GLVEELQAEK VMTDEQEEEL RRQISVFHAI RESLLESYKR IASEYLSLHG 120 TRIENPSTDP LKTTEGYKGS NRKQRWSATP MQRLILDKIY HSGKISPNKE EIKWITSELS 180 QHGEITESNV YNWFQNRKTR EKRKRVDELV HKIKSEVEPG AESSNGKKIR LEKIDFDNKQ 240 YLSTDAHFFQ TSEVNYEMHS INQEFDIAQD TNPSIDNLSS YDPSQIPVIE KTQANPSNDY 300 LMDDLQILAE LDSFDQLMSN LDPELWF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008809129.1	1e-168	WUSCHEL-related homeobox 8
TrEMBL	A0A2H3Z6H4	1e-166	A0A2H3Z6H4_PHODC; WUSCHEL-related homeobox 8
STRING	XP_008809127.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-34	WUSCHEL related homeobox 13