PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1203261g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARR-B
Protein Properties Length: 701aa    MW: 77454.8 Da    PI: 5.7914
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1203261g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.31.5e-27212265155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr++W+ +LH++Fv av+qL G +kA+Pk+ilelmkv+ Lt+e+v+SHLQkYRl
  PDK_30s1203261g002 212 KPRVVWSVDLHQQFVAAVNQL-GVDKAVPKKILELMKVPRLTRENVASHLQKYRL 265
                         79*******************.********************************8 PP
2Response_reg78.13.1e-26321401109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+vdD+p+ +++l ++l+k  y +v++++ + +al++l+e++  +D++l D+ mp+mdG++ll++i  e  +lp+i+++a +  + + + 
  PDK_30s1203261g002  32 VLVVDDDPTCLKILDRMLRKCLY-DVTTCTRAAAALAMLRERRgaFDVVLSDVYMPDMDGFKLLEHIGLEM-DLPVIMMSADDGRDVVMKG 120
                         89*********************.***************999999**********************6654.8****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         +  Ga d+l Kp+ +e+l++
  PDK_30s1203261g002 121 VTHGACDYLIKPVRMEALRN 140
                         ****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.0E-16111695IPR017053Response regulator B-type, plant
SuperFamilySSF521721.42E-3629158IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.2E-4329166No hitNo description
SMARTSM004482.1E-3030142IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.53331146IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.9E-2332140IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.76E-2533145No hitNo description
SuperFamilySSF466893.58E-19209269IPR009057Homeodomain-like
PROSITE profilePS5129410.55209268IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-29211270IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-24212265IPR006447Myb domain, plants
PfamPF002496.6E-7214264IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MDPSRAAAST ASSGRPRDGV GPPPDFPAGL RVLVVDDDPT CLKILDRMLR KCLYDVTTCT  60
RAAAALAMLR ERRGAFDVVL SDVYMPDMDG FKLLEHIGLE MDLPVIMMSA DDGRDVVMKG  120
VTHGACDYLI KPVRMEALRN IWQHVVRKRR NELKELEHSG SAEENDRQKR ALEDGDNASS  180
ASEGNWKNVK RRKDGKEEEE VEEREDPSTL KKPRVVWSVD LHQQFVAAVN QLGVDKAVPK  240
KILELMKVPR LTRENVASHL QKYRLYLRRL SVPQHEARLD TPYTGASEAT FRSVGSFDGL  300
DTQALAVSGQ FPPQSLTTLH SGPRRVTTTG IGLPSIDQVG QHGQSQQLVE SYGNMGLRVG  360
EGASGFFNLP SSQRTSTSFP GGTINVNLSN SLPMQMTQQG QQFSVCQQQN RIHISMPRQL  420
QTREQLLNEI LGEYDSRLST PMGHQILSNE VSGHVSGRGR SNMNVRTSLR EGYMNASSYG  480
PLSHALYADF SNSGMNESTG SCYPLASGAG TTNFTSIGML QEALPPVGNV ETLGNSVSVK  540
GANDFVPDYD LLSDVRQSKS QDWKSQNIDV SYQSAQQLGS KQSNIDFGSS RLAHEDSIAA  600
IKDDKSRNAC TVRKEIFSVR TEIEHEKGDC TAQRNGTILV ENSLRVMAEG MSDLSYQEVL  660
FDDNIIQNEL MNVVGKKQQE GVGQVDPEFN FDGYSWDDIQ V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-22211271464ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186192KNVKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008790852.10.0two-component response regulator ARR1-like isoform X1
TrEMBLA0A2H3XZD90.0A0A2H3XZD9_PHODC; two-component response regulator ARR1-like isoform X1
STRINGXP_008790852.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2940624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-130response regulator 2