PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1203091g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WOX
Protein Properties Length: 128aa    MW: 14273.3 Da    PI: 9.5121
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1203091g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.53.7e-211877357
                        --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        +R+++tkeq+ +Le l+++  r+psae++++++ kl    +++ ++V++WFqN++a++++
  PDK_30s1203091g005 18 SRWNPTKEQIAILEGLYRQgIRTPSAEQIQQITGKLreygSIEGKNVFYWFQNHKARQRQ 77
                        7*****************99**************************************97 PP
2Wus_type_Homeobox118.33.5e-381779365
   Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                         +RW+Pt+eQi iLe ly++G+rtP++e+iq+it +L+eyG ie+kNVfyWFQN+kaR+rqkq
  PDK_30s1203091g005 17 GSRWNPTKEQIAILEGLYRQGIRTPSAEQIQQITGKLREYGSIEGKNVFYWFQNHKARQRQKQ 79
                        68***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-141286IPR009057Homeodomain-like
PROSITE profilePS5007110.7061378IPR001356Homeobox domain
SMARTSM003899.0E-61582IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-81683IPR009057Homeodomain-like
PfamPF000466.5E-191877IPR001356Homeobox domain
CDDcd000867.45E-51979No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MEECKGSASA SSPSPSGSRW NPTKEQIAIL EGLYRQGIRT PSAEQIQQIT GKLREYGSIE  60
GKNVFYWFQN HKARQRQKQK QESFAYYSRL FHQAPPTPVL SPVPPPPTCT NGEPLGLSVL  120
CLVSILLL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269|PubMed:14711878}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017700538.14e-70WUSCHEL-related homeobox 5-like
SwissprotQ6X7K18e-42WOX2_ARATH; WUSCHEL-related homeobox 2
TrEMBLA0A2H3ZWL48e-69A0A2H3ZWL4_PHODC; WUSCHEL-related homeobox 5-like
STRINGXP_008802781.12e-75(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.13e-41WUSCHEL related homeobox 2
Publications ? help Back to Top
  1. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  2. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    WUSCHEL-RELATED HOMEOBOX 2 is important for protoderm and suspensor development in the gymnosperm Norway spruce.
    BMC Plant Biol., 2016. 16: p. 19
    [PMID:26786587]
  3. Zhang Z,Tucker E,Hermann M,Laux T
    A Molecular Framework for the Embryonic Initiation of Shoot Meristem Stem Cells.
    Dev. Cell, 2017. 40(3): p. 264-277.e4
    [PMID:28171749]