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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
PDK_30s1170101g002 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
| Family |
MYB |
| Protein Properties |
Length: 351aa MW: 39391 Da PI: 6.5067 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PDK_30s1170101g002 | genome | PDK | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 52.8 | 9.1e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
+g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl
PDK_30s1170101g002 14 KGPWSPEEDAKLKAYIEEHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
79*********************************************97 PP
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| 2 | Myb_DNA-binding | 41.1 | 4e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g +++eEd+++ + G++ W+ Ia+ m+ gRt++++k++w++
PDK_30s1170101g002 69 GGFSEEEDQIICSLYISIGSR-WSIIAAQMP-GRTDNDVKNYWNT 111
569******************.*********.***********97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 351 aa
Download sequence Send
to blast |
MGRAPCCDKA HVKKGPWSPE EDAKLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60
YLRPDIRHGG FSEEEDQIIC SLYISIGSRW SIIAAQMPGR TDNDVKNYWN TRLKKKLLGK 120
RRDSWQSRRL SSNHEPNEET NGMSPDASSQ ALSASAPERM QLHKQLQGHC NPFSFYNKPG 180
LWPKFHPLGD ELFFHIQHTD ANTIAATPVQ QASNASMIEP SCQNVFLIKP DIPNPMNAKI 240
QEDLNSSTLG FPSPSSSGAL RMENPSSNFN AAAAGLQDEL HDLLYQKNRC SGGQEQQQQT 300
EFECSKDMNG EKVSMDWWPT DGFEKSSSGS WDSASNPQAD LLQEYELGYD L
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
