PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100268210032 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | WRKY | ||||||||
Protein Properties | Length: 467aa MW: 50808.7 Da PI: 5.1837 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.2 | 1.1e-30 | 223 | 281 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Ote100268210032|100268210032 223 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILTTTYEGNHNHP 281 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.7E-33 | 207 | 283 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-27 | 215 | 283 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.092 | 217 | 283 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.1E-36 | 222 | 282 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-26 | 224 | 281 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MNNRSTVFPV DHSTGDNTAV LAEVDFFSRQ IDQVNAFVKK EINETRDFDV NTGLQLVTAR 60 DKSMVDDGVS SAKIEMGQLE VELERMKVEN QRLKGMLSHI SSNYTALQMQ LHAFMQHQQN 120 STSTITTQLQ ETNEGKSEEN GSVMVPREFL DMSPSGTNRN EQSGSSSEER SPSDHKRLDR 180 DESEDWEPNK APKLSPPKPA ADQPAMRKAR VSVRARSEAP MISDGCQWRK YGQKMAKGNP 240 CPRAYYRCTM AVGCPVRKQV QRCAEDRTIL TTTYEGNHNH PLPPAAMAMA STTSAAADML 300 LSGSTASADG LMNPNFLART MLPCSSTMAT ISASPPFPTI TLDLTQSPNP LQLQRPGPQY 360 QAPFGPVIPQ VFGQVIHNQS RFSGLQMSQE INEAGPGHLM AEQPSYADTL SAATAAITSD 420 PKFTAALAAA ISSILGGARL NSDGADATNE NNADVNTIDI NDNIPEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-22 | 209 | 285 | 1 | 76 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096037.1 | 1e-171 | WRKY transcription factor 6 | ||||
Refseq | XP_022865069.1 | 1e-171 | WRKY transcription factor 6-like isoform X1 | ||||
Swissprot | Q9C519 | 1e-126 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | D0PSE9 | 0.0 | D0PSE9_9LAMI; WRKY transcription factor | ||||
STRING | EOY28756 | 1e-168 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA945 | 24 | 92 |