PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100257030021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | WOX | ||||||||
Protein Properties | Length: 244aa MW: 27684.2 Da PI: 6.0407 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.2 | 9.2e-21 | 60 | 120 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + +ps+++++e++++l +++e++V++WFqNrRa+ k+ Ote100257030021|100257030021 60 RQRWTPTPMQLQILERIFDQgIGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 120 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 104 | 1e-33 | 60 | 122 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Ote100257030021|100257030021 60 RQRWTPTPMQLQILERIFDQGIGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 122 89***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-17 | 55 | 126 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.463 | 56 | 121 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-18 | 58 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.5E-14 | 58 | 125 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.63E-13 | 60 | 122 | No hit | No description |
Pfam | PF00046 | 1.4E-18 | 60 | 120 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MTDEQMEVLR KQIAVYATIC EQLVELHKSL TSQNDLAGVR LGNLYCDPLM TSSAHKITGR 60 QRWTPTPMQL QILERIFDQG IGTPSKQKIK EITSELSQHG QISETNVYNW FQNRRARSKR 120 KQQSTPANNA ESEVETEVES PNEKKTKPEE FQSQHMLPSR AEDLCFQNPQ TTSAMHSVIP 180 IISKPEPMLP AEGTSKFGGN FGQMSFYGNM LSNPRNGMEQ LIGKIEVPGN YNPYLQQDEY 240 NMDG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00617 | PBM | Transfer from AT4G35550 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099896.1 | 1e-152 | WUSCHEL-related homeobox 8 | ||||
Swissprot | Q5QMM3 | 1e-86 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A4D8YII2 | 1e-152 | A0A4D8YII2_SALSN; Uncharacterized protein | ||||
STRING | XP_009777417.1 | 1e-131 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5675 | 24 | 37 |
Publications ? help Back to Top | |||
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