PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

C2H2

Protein Properties

Length: 416aa MW: 45112.5 Da PI: 6.7658

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_20263A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	242	261	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Oropetium_20150105_20263A 242 FSCPVCYKTFNRYNNMQMHM 261 89*****************9 PP
2	zf-C2H2	12.5	0.00043	328	348	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk F k + ++H +++ Oropetium_20150105_20263A 328 CRKCGKAFAVKGDWRTHEKNC 348 *****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.81E-5	238	264	No hit	No description
SMART	SM00355	0.45	242	264	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.5E-6	242	261	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.743	242	269	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	244	264	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.58E-6	310	346	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.4E-5	313	346	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	82	326	346	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.621	326	346	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	352	375	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009860	Biological Process	pollen tube growth
GO:0010500	Biological Process	transmitting tissue development
GO:1990058	Biological Process	fruit replum development
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MEDPYYTSFF KNHPYYYYTS STLPAAPAAH HLSPSFPPYA ATLYPAAAPH YPAFFQPPLP 60 PATLPPLDDS SPPSPPLKEA LPLLSLSPTR CAASARQRNV EAVDYDSDDD AAEEFLREAA 120 VGRSGSRAPL FADLNCIPTC CDDEGDPMDV EADAVALHIG LPAAAPGNGT EADLLSALSS 180 SRAGAGXXXX XXXXXXXXXT GAGDGEDEVV PLGFATTPIG RLNKGQYWIP TPAQILIGPT 240 QFSCPVCYKT FNRYNNMQMH MWGHGSQYRK GPESLRGVQP TAMLRLPCYC CAPGCRNNID 300 HPRARPLKDF RTLQTHYKRK HGLKPFLCRK CGKAFAVKGD WRTHEKNCGK LWYCLCGSEF 360 KHKRSLKDHA RAFGHGHGAF GCNADGADGL EDDDEGAVSE IEQDCAGAGS CRSAR*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MEDPYYTSFF KNHPYYYYTS STLPAAPAAH HLSPSFPPYA ATLYPAAAPH YPAFFQPPLP  60
PATLPPLDDS SPPSPPLKEA LPLLSLSPTR CAASARQRNV EAVDYDSDDD AAEEFLREAA  120
VGRSGSRAPL FADLNCIPTC CDDEGDPMDV EADAVALHIG LPAAAPGNGT EADLLSALSS  180
SRAGAGXXXX XXXXXXXXXT GAGDGEDEVV PLGFATTPIG RLNKGQYWIP TPAQILIGPT  240
QFSCPVCYKT FNRYNNMQMH MWGHGSQYRK GPESLRGVQP TAMLRLPCYC CAPGCRNNID  300
HPRARPLKDF RTLQTHYKRK HGLKPFLCRK CGKAFAVKGD WRTHEKNCGK LWYCLCGSEF  360
KHKRSLKDHA RAFGHGHGAF GCNADGADGL EDDDEGAVSE IEQDCAGAGS CRSAR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_20263A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP096907	0.0	FP096907.1 Phyllostachys edulis cDNA clone: bphylf041f10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821697.1	0.0	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-119	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A2T7D961	0.0	A0A2T7D961_9POAL; Uncharacterized protein
STRING	Pavir.Fa00506.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-110	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_20263A

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]