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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Oropetium_20150105_20110A |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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| Family |
NAC |
| Protein Properties |
Length: 234aa MW: 26146.7 Da PI: 8.9701 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_20110A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 168.5 | 2.2e-52 | 3 | 130 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgy 82
lppGfrFhPtd+elv +yLk+kv++ k+el evi+ +++yk+ePw+Lp k + +++ ew+fF++rd+ky++g+r+nrat++gy
Oropetium_20150105_20110A 3 LPPGFRFHPTDDELVGYYLKRKVDNLKIEL-EVIPVIELYKSEPWELPeKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATATGY 85
79****************************.99**************95334445667************************** PP
NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
Wkatgkd+++ + +g + g++ktLvfy+grap ge+tdWvmheyrl
Oropetium_20150105_20110A 86 WKATGKDRRIAC-EGGVYGVRKTLVFYRGRAPGGERTDWVMHEYRL 130
************.8899***************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0008283 | Biological Process | cell proliferation |
| GO:0071365 | Biological Process | cellular response to auxin stimulus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 234 aa
Download sequence Send
to blast |
MTLPPGFRFH PTDDELVGYY LKRKVDNLKI ELEVIPVIEL YKSEPWELPE KSFLPKRDLE 60
WFFFCPRDRK YPNGSRTNRA TATGYWKATG KDRRIACEGG VYGVRKTLVF YRGRAPGGER 120
TDWVMHEYRL CQDLAHGASN FIGGFALCRV IKRHEAGLLQ GEPAGSRAKA AGSKMSKVPS 180
NSSLVSSEQL STFTSANSGS PPPPLDMMSR GMCAVADESC NNFQNSFAYD LTGT
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-53 | 1 | 157 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-53 | 1 | 157 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-53 | 1 | 157 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-53 | 1 | 157 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-53 | 1 | 157 | 18 | 172 | NAC domain-containing protein 19 |
| 3swm_B | 2e-53 | 1 | 157 | 18 | 172 | NAC domain-containing protein 19 |
| 3swm_C | 2e-53 | 1 | 157 | 18 | 172 | NAC domain-containing protein 19 |
| 3swm_D | 2e-53 | 1 | 157 | 18 | 172 | NAC domain-containing protein 19 |
| 3swp_A | 2e-53 | 1 | 157 | 18 | 172 | NAC domain-containing protein 19 |
| 3swp_B | 2e-53 | 1 | 157 | 18 | 172 | NAC domain-containing protein 19 |
| 3swp_C | 2e-53 | 1 | 157 | 18 | 172 | NAC domain-containing protein 19 |
| 3swp_D | 2e-53 | 1 | 157 | 18 | 172 | NAC domain-containing protein 19 |
| 4dul_A | 2e-53 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
| 4dul_B | 2e-53 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}. |
